Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-823P-201ENST00000391042 103 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-243P-201ENST00000391140 107 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 SNORD18.2-201ENST00000459604 70 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-976P-201ENST00000516086 111 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 MTND4LP32-201ENST00000636111 270 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.22□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.22□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.22□□□□□ -2.61
CCDC88AQ3V6T2 RNA5SP169-201ENST00000517268 117 ntBASIC-1.22□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-86P-201ENST00000606534 107 ntBASIC-1.22□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-235P-201ENST00000362644 107 ntBASIC-1.23□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.23□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-381P-201ENST00000391259 108 ntBASIC-1.23□□□□□ -2.61
CCDC88AQ3V6T2 MIR548AE2-201ENST00000583456 67 ntBASIC-1.23□□□□□ -2.61
CCDC88AQ3V6T2 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.23□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 SNORD38.2-201ENST00000384470 69 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-850P-201ENST00000516934 103 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 AC026407.1-201ENST00000518369 204 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 SNORA25.1-201ENST00000362326 128 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 SNORD27-201ENST00000363981 72 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-524P-201ENST00000384270 107 ntBASIC-1.24□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-770P-201ENST00000363929 105 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-806P-201ENST00000365147 105 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 SNORA51.5-201ENST00000384126 131 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 HLA-S-202ENST00000425174 53 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 MIR4282-201ENST00000583613 67 ntBASIC-1.25□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-973P-201ENST00000364690 107 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 MIR652-201ENST00000385278 98 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 ELOCP20-201ENST00000422460 345 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 MIR8068-201ENST00000618032 68 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 AC022137.1-201ENST00000483735 151 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 YWHAEP3-201ENST00000582767 121 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 AC145423.2-201ENST00000610631 239 ntBASIC-1.26□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.27□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.27□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.27□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.27□□□□□ -2.61
CCDC88AQ3V6T2 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.27□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-226P-201ENST00000363778 107 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 RNU6-651P-201ENST00000411040 105 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 AC138393.2-201ENST00000414742 246 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.28□□□□□ -2.61
CCDC88AQ3V6T2 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-880P-201ENST00000384526 107 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-578P-201ENST00000390980 103 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-732P-201ENST00000516033 103 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-240P-201ENST00000516098 97 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 AC026421.1-201ENST00000519101 163 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 RNY4P7-201ENST00000364600 96 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 FGF7P4-201ENST00000509595 295 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 MIR548O2-201ENST00000616090 70 ntBASIC-1.29□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 SNORD116-4-201ENST00000384733 96 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 MIR548E-201ENST00000408287 88 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 AL500527.2-201ENST00000454105 95 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-274P-201ENST00000459566 107 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 AC082651.2-201ENST00000496833 166 ntBASIC-1.3□□□□□ -2.62
CCDC88AQ3V6T2 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 snoR1.1-201ENST00000628177 80 ntBASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 uc_338.19-201ENST00000616808 99 ntBASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 AC087741.2-201ENST00000619415 172 ntBASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 U4.1-201ENST00000620349 87 ntBASIC-1.31□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.262-201ENST00000364641 102 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 SNORA32-201ENST00000384072 121 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 SNORD77B-201ENST00000391112 67 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 MIR1252-201ENST00000408861 65 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 AC113618.1-201ENST00000416747 285 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 MIR5591-201ENST00000578248 65 ntBASIC-1.32□□□□□ -2.62
CCDC88AQ3V6T2 SNORD115-19-201ENST00000363098 82 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 SNORD115-18-201ENST00000363293 82 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 SNORD115-17-201ENST00000364612 82 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 SNORD42.2-201ENST00000365570 69 ntBASIC-1.33□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 156.5 ms