Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL035470.1-201ENST00000622571 220 ntBASIC0.83□□□□□ -2.28
CCDC144BQ3MJ40 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC144BQ3MJ40 RNA5SP94-201ENST00000516917 108 ntBASIC0.82□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-170P-201ENST00000362832 104 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 Y_RNA.281-201ENST00000364774 94 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 MIR936-201ENST00000401264 98 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-1064P-201ENST00000410626 104 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 BX276092.1-201ENST00000427368 251 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 AC244505.6-201ENST00000452829 130 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-90P-201ENST00000606352 106 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 AL442128.1-201ENST00000615151 90 ntBASIC0.81□□□□□ -2.28
CCDC144BQ3MJ40 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 SNORD18A-201ENST00000363753 72 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 Y_RNA.377-201ENST00000365644 108 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-1144P-201ENST00000384247 104 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-476P-201ENST00000384726 107 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 Y_RNA.567-201ENST00000384736 106 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 RNU2-51P-201ENST00000410708 197 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 AL606753.1-201ENST00000427435 87 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 SNRPGP12-201ENST00000449481 213 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 RN7SKP12-201ENST00000516275 143 ntBASIC0.8□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-1056P-201ENST00000383996 107 ntBASIC0.79□□□□□ -2.28
CCDC144BQ3MJ40 Y_RNA.549-201ENST00000384657 102 ntBASIC0.79□□□□□ -2.28
CCDC144BQ3MJ40 SPINT5P-201ENST00000448174 155 ntBASIC0.79□□□□□ -2.28
CCDC144BQ3MJ40 RNU4-54P-201ENST00000516428 129 ntBASIC0.79□□□□□ -2.28
CCDC144BQ3MJ40 MIR4694-201ENST00000578534 80 ntBASIC0.79□□□□□ -2.28
CCDC144BQ3MJ40 RNA5SP245-201ENST00000364239 121 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 RNY1P8-201ENST00000383970 114 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-1201P-201ENST00000384227 107 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-1081P-201ENST00000384537 107 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 MIR519A1-201ENST00000385257 85 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 SNORD71-201ENST00000411292 86 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 RNU6-1006P-201ENST00000516998 103 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 MIR5009-201ENST00000578736 100 ntBASIC0.78□□□□□ -2.28
CCDC144BQ3MJ40 U8.6-201ENST00000364939 135 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 Y_RNA.342-201ENST00000365352 113 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 RNU6-945P-201ENST00000383947 107 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 SNORD28-201ENST00000384706 75 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 MIR548G-201ENST00000408442 89 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 AL353813.1-201ENST00000440700 253 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 AC097635.1-201ENST00000450678 155 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 RNU6-850P-201ENST00000516934 103 ntBASIC0.77□□□□□ -2.29
CCDC144BQ3MJ40 MIR193B-201ENST00000384907 83 ntBASIC0.76□□□□□ -2.29
CCDC144BQ3MJ40 SNORA40.8-201ENST00000411034 126 ntBASIC0.76□□□□□ -2.29
CCDC144BQ3MJ40 TRAJ51-201ENST00000504127 63 ntBASIC0.76□□□□□ -2.29
CCDC144BQ3MJ40 SCARNA16.5-201ENST00000517114 183 ntBASIC0.76□□□□□ -2.29
CCDC144BQ3MJ40 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC144BQ3MJ40 Y_RNA.323-201ENST00000365157 109 ntBASIC0.75□□□□□ -2.29
CCDC144BQ3MJ40 RNA5SP193-201ENST00000410353 107 ntBASIC0.75□□□□□ -2.29
CCDC144BQ3MJ40 RNA5SP47-201ENST00000517230 109 ntBASIC0.75□□□□□ -2.29
CCDC144BQ3MJ40 RNY3P2-201ENST00000362918 102 ntBASIC0.74□□□□□ -2.29
CCDC144BQ3MJ40 RNA5SP517-201ENST00000364724 117 ntBASIC0.74□□□□□ -2.29
CCDC144BQ3MJ40 SNORD63B-201ENST00000411005 70 ntBASIC0.74□□□□□ -2.29
CCDC144BQ3MJ40 AC091304.10-201ENST00000641554 121 ntBASIC0.74□□□□□ -2.29
CCDC144BQ3MJ40 Y_RNA.10-201ENST00000362371 110 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 Y_RNA.35-201ENST00000362601 101 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 SNORD115-24-201ENST00000363528 82 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 MIR4711-201ENST00000578274 70 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 AC244669.1-204ENST00000621564 178 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 MIR6828-201ENST00000636181 60 ntBASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC144BQ3MJ40 RNA5SP347-201ENST00000362445 119 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 RNU6-832P-201ENST00000363319 107 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 SNORD114-23-201ENST00000363536 72 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 SNORA8.2-201ENST00000384372 139 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 MIR599-201ENST00000385069 95 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 MIR577-201ENST00000385196 96 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 Y_RNA.809-201ENST00000516058 95 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 RNA5SP268-201ENST00000516828 124 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 MIR1273G-201ENST00000577677 100 ntBASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC144BQ3MJ40 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-1099P-201ENST00000363533 107 ntBASIC0.71□□□□□ -2.3
CCDC144BQ3MJ40 Y_RNA.273-201ENST00000364703 102 ntBASIC0.71□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-1107P-201ENST00000364817 104 ntBASIC0.71□□□□□ -2.3
CCDC144BQ3MJ40 AC141557.1-201ENST00000540982 400 ntBASIC0.71□□□□□ -2.3
CCDC144BQ3MJ40 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.7□□□□□ -2.3
CCDC144BQ3MJ40 Y_RNA.173-201ENST00000363776 113 ntBASIC0.7□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-1014P-201ENST00000383940 103 ntBASIC0.7□□□□□ -2.3
CCDC144BQ3MJ40 MIR518A1-201ENST00000385068 85 ntBASIC0.7□□□□□ -2.3
CCDC144BQ3MJ40 RNA5SP227-201ENST00000516184 113 ntBASIC0.7□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-1260P-201ENST00000362944 107 ntBASIC0.69□□□□□ -2.3
CCDC144BQ3MJ40 SNORA36.1-201ENST00000363424 132 ntBASIC0.69□□□□□ -2.3
CCDC144BQ3MJ40 RNA5SP499-201ENST00000363982 119 ntBASIC0.69□□□□□ -2.3
CCDC144BQ3MJ40 RNU4-36P-201ENST00000364294 144 ntBASIC0.69□□□□□ -2.3
CCDC144BQ3MJ40 AC098934.3-201ENST00000430450 190 ntBASIC0.69□□□□□ -2.3
CCDC144BQ3MJ40 AC010487.4-201ENST00000637027 61 ntBASIC0.69□□□□□ -2.3
CCDC144BQ3MJ40 SNORD118-201ENST00000363593 134 ntBASIC0.68□□□□□ -2.3
CCDC144BQ3MJ40 Y_RNA.247-201ENST00000364500 92 ntBASIC0.68□□□□□ -2.3
CCDC144BQ3MJ40 SNORA19-201ENST00000384737 128 ntBASIC0.68□□□□□ -2.3
CCDC144BQ3MJ40 MIR4439-201ENST00000583746 80 ntBASIC0.68□□□□□ -2.3
CCDC144BQ3MJ40 Y_RNA.57-201ENST00000362806 113 ntBASIC0.67□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-1125P-201ENST00000363601 107 ntBASIC0.67□□□□□ -2.3
CCDC144BQ3MJ40 SNORD45B-201ENST00000364617 72 ntBASIC0.67□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-480P-201ENST00000384332 107 ntBASIC0.67□□□□□ -2.3
CCDC144BQ3MJ40 RNU6-1254P-201ENST00000391266 104 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms