Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-863P-201ENST00000515989 104 ntBASIC0.43□□□□□ -2.34
COL28A1Q2UY09 Y_RNA.773-201ENST00000607168 90 ntBASIC0.43□□□□□ -2.34
COL28A1Q2UY09 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.43□□□□□ -2.34
COL28A1Q2UY09 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.43□□□□□ -2.34
COL28A1Q2UY09 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 MIRLET7D-201ENST00000362263 87 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNA5SP245-201ENST00000364239 121 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNA5SP331-201ENST00000364986 107 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNU6-30P-201ENST00000384561 107 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNU6-735P-201ENST00000410612 107 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNU6-772P-201ENST00000516042 105 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNU6-1061P-201ENST00000516530 99 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 RNA5SP268-201ENST00000516828 124 ntBASIC0.42□□□□□ -2.34
COL28A1Q2UY09 MTND5P18-201ENST00000445624 1801 ntBASIC0.41□□□□□ -2.34
COL28A1Q2UY09 SNORA63.5-201ENST00000363548 123 ntBASIC0.41□□□□□ -2.34
COL28A1Q2UY09 Y_RNA.360-201ENST00000365512 102 ntBASIC0.41□□□□□ -2.34
COL28A1Q2UY09 SNORA2A-201ENST00000383885 135 ntBASIC0.41□□□□□ -2.34
COL28A1Q2UY09 MIR4500-201ENST00000579472 76 ntBASIC0.41□□□□□ -2.34
COL28A1Q2UY09 AC091304.10-201ENST00000641554 121 ntBASIC0.41□□□□□ -2.34
COL28A1Q2UY09 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.35
COL28A1Q2UY09 RNU6-1099P-201ENST00000363533 107 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 RNU6-80P-201ENST00000384195 107 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 MIR519A1-201ENST00000385257 85 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 RNU6-1211P-201ENST00000459179 105 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 RNU6-521P-201ENST00000516663 105 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 RNU6-971P-201ENST00000516920 106 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 SNORA25.18-201ENST00000607153 114 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 AC244669.1-204ENST00000621564 178 ntBASIC0.4□□□□□ -2.35
COL28A1Q2UY09 SNORD44.1-201ENST00000363202 61 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 RNU6-704P-201ENST00000364162 103 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 RNU6-571P-201ENST00000384128 107 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 RNU6-187P-201ENST00000384139 106 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 MIR635-201ENST00000384830 98 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 Y_RNA.630-201ENST00000411370 108 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 Y_RNA.712-201ENST00000517011 92 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 MIR1255B1-201ENST00000636325 63 ntBASIC0.39□□□□□ -2.35
COL28A1Q2UY09 RNU6-363P-201ENST00000362895 105 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 SNORD38.2-201ENST00000384470 69 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 MIR34C-201ENST00000384831 77 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 RNA5SP299-201ENST00000391203 116 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 RNA5SP25-201ENST00000410815 110 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 SNRPGP12-201ENST00000449481 213 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 AC097635.1-201ENST00000450678 155 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 RNU6-1018P-201ENST00000516577 106 ntBASIC0.38□□□□□ -2.35
COL28A1Q2UY09 AL157777.2-201ENST00000258070 137 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 RNU6-1313P-201ENST00000362622 102 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 Y_RNA.218-201ENST00000364218 104 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 RNU2-59P-201ENST00000410482 191 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 RNU7-107P-201ENST00000459121 61 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 RNA5SP227-201ENST00000516184 113 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 MIR7107-201ENST00000611489 80 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 MIR6718-201ENST00000616153 80 ntBASIC0.37□□□□□ -2.35
COL28A1Q2UY09 RNU6-1327P-201ENST00000365302 105 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 Y_RNA.344-201ENST00000365381 112 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 Y_RNA.525-201ENST00000384570 113 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 MIR548M-201ENST00000408260 86 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 SUMO1P3-201ENST00000439961 304 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 TRAJ51-201ENST00000504127 63 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 MIR4679-2-201ENST00000578358 77 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 MIR3914-2-201ENST00000637339 95 ntBASIC0.36□□□□□ -2.35
COL28A1Q2UY09 RNU6-170P-201ENST00000362832 104 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 Y_RNA.71-201ENST00000362892 104 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 SNORD115-24-201ENST00000363528 82 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 BX276092.1-201ENST00000427368 251 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 RNU6-848P-201ENST00000515948 107 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 RNU6-617P-201ENST00000516147 107 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 RNU6-473P-201ENST00000516164 107 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 RNU6-1049P-201ENST00000516414 107 ntBASIC0.35□□□□□ -2.35
COL28A1Q2UY09 RNA5SP403-201ENST00000363598 108 ntBASIC0.34□□□□□ -2.36
COL28A1Q2UY09 RNU6-1126P-201ENST00000384002 107 ntBASIC0.34□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.507-201ENST00000384500 99 ntBASIC0.34□□□□□ -2.36
COL28A1Q2UY09 RPL39P34-201ENST00000477141 156 ntBASIC0.34□□□□□ -2.36
COL28A1Q2UY09 RNU6-659P-201ENST00000516454 104 ntBASIC0.34□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.362-201ENST00000365518 110 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 RNU6-409P-201ENST00000384114 104 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 Z95118.1-201ENST00000421372 247 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 RNU6-1006P-201ENST00000516998 103 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 RNU7-161P-201ENST00000517289 62 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 MIR5190-201ENST00000581537 80 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 AL162726.3-218ENST00000636401 95 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 U6.95-201ENST00000636931 70 ntBASIC0.33□□□□□ -2.36
COL28A1Q2UY09 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.49-201ENST00000362714 112 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 RNU6-81P-201ENST00000365608 104 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 SNORD116-14-201ENST00000383894 92 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 SNORD116-17-201ENST00000383929 92 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 SNORD116-15-201ENST00000384445 92 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 SNORD116-19-201ENST00000384729 92 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 MIR599-201ENST00000385069 95 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 SNORA7.5-201ENST00000410672 110 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 SNORD63B-201ENST00000411005 70 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 AL353813.1-201ENST00000440700 253 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
COL28A1Q2UY09 MIR103A1-201ENST00000362165 78 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 SNORD38.1-201ENST00000363863 68 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.185-201ENST00000363894 100 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 RNU6-726P-201ENST00000364680 107 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.342-201ENST00000365352 113 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 RNU6-959P-201ENST00000384671 107 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 194.3 ms