Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-1054P-201ENST00000411293 104 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 AC092628.1-201ENST00000436250 252 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 SCARNA18B-201ENST00000458806 135 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 AC048334.1-201ENST00000477975 159 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 Y_RNA.809-201ENST00000516058 95 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 RNA5SP458-201ENST00000516188 119 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 AC036111.3-201ENST00000526389 112 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 MIR4303-201ENST00000581299 66 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 RNU6-788P-201ENST00000390967 104 ntBASIC1.79□□□□□ -2.12
SOX4Q06945 AC015818.7-201ENST00000428754 109 ntBASIC1.79□□□□□ -2.12
SOX4Q06945 AC004223.1-201ENST00000479840 271 ntBASIC1.79□□□□□ -2.12
SOX4Q06945 MIR502-201ENST00000606349 86 ntBASIC1.79□□□□□ -2.12
SOX4Q06945 RNU6-1260P-201ENST00000362944 107 ntBASIC1.78□□□□□ -2.12
SOX4Q06945 Y_RNA.264-201ENST00000364665 102 ntBASIC1.78□□□□□ -2.12
SOX4Q06945 SNORD90-201ENST00000391145 111 ntBASIC1.78□□□□□ -2.12
SOX4Q06945 RNU6-523P-201ENST00000516304 54 ntBASIC1.78□□□□□ -2.12
SOX4Q06945 RNU6-765P-201ENST00000516916 99 ntBASIC1.78□□□□□ -2.12
SOX4Q06945 MIR3134-201ENST00000579433 74 ntBASIC1.78□□□□□ -2.12
SOX4Q06945 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.78□□□□□ -2.12
SOX4Q06945 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.13
SOX4Q06945 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
SOX4Q06945 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SOX4Q06945 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.77□□□□□ -2.13
SOX4Q06945 RNU6-208P-201ENST00000362431 107 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 MIR125B2-201ENST00000385128 89 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 SNORA75.2-201ENST00000391138 150 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 SNORA75.3-201ENST00000391231 150 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 AL606490.4-201ENST00000423117 127 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 Y_RNA.697-201ENST00000516776 113 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 MIR4771-2-201ENST00000577758 74 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 MIR4771-1-201ENST00000582617 74 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 TRDV1-202ENST00000621643 102 ntBASIC1.77□□□□□ -2.13
SOX4Q06945 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SOX4Q06945 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
SOX4Q06945 MIR520H-201ENST00000385126 88 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 RNU4-62P-201ENST00000410125 130 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 Y_RNA.676-201ENST00000516393 96 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 RN7SKP88-201ENST00000516847 250 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 7SK.8-201ENST00000612110 250 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 7SK.11-201ENST00000615477 250 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 7SK.13-201ENST00000622040 250 ntBASIC1.76□□□□□ -2.13
SOX4Q06945 Y_RNA.42-201ENST00000362660 108 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 Y_RNA.532-201ENST00000384590 113 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 RNU1-78P-201ENST00000391248 165 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 RNU6-807P-201ENST00000516805 107 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 RNU6-448P-201ENST00000517052 107 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 RNU7-156P-201ENST00000517214 74 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.75□□□□□ -2.13
SOX4Q06945 MIR4484-201ENST00000582855 83 ntBASIC1.75□□□□□ -2.13
SOX4Q06945 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SOX4Q06945 Y_RNA.239-201ENST00000364444 113 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 Y_RNA.363-201ENST00000365529 113 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SOX4Q06945 SNORD111-201ENST00000408139 94 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 RPS27P16-201ENST00000425758 201 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 SNORA31.2-201ENST00000516019 134 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 MIR3198-2-201ENST00000577868 80 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 AL645939.4-201ENST00000604495 135 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 AC106800.4-201ENST00000614905 153 ntBASIC1.74□□□□□ -2.13
SOX4Q06945 RNU6-411P-201ENST00000384451 107 ntBASIC1.73□□□□□ -2.13
SOX4Q06945 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.73□□□□□ -2.13
SOX4Q06945 RPS26P5-201ENST00000418544 335 ntBASIC1.73□□□□□ -2.13
SOX4Q06945 AC023827.1-201ENST00000569247 97 ntBASIC1.73□□□□□ -2.13
SOX4Q06945 MIR4696-201ENST00000581431 70 ntBASIC1.73□□□□□ -2.13
SOX4Q06945 MIR1297-201ENST00000637311 77 ntBASIC1.73□□□□□ -2.13
SOX4Q06945 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SOX4Q06945 RNU6-664P-201ENST00000362381 107 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 RNU6-1051P-201ENST00000365471 102 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 SNORA67.5-201ENST00000391036 107 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 AC097635.1-201ENST00000450678 155 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 snoU13.17-201ENST00000458802 104 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 AC114801.3-201ENST00000510231 177 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 RNU7-40P-201ENST00000516397 64 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 AC138907.6-201ENST00000568401 126 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 AC138869.1-201ENST00000568623 124 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 U6.100-201ENST00000636230 99 ntBASIC1.72□□□□□ -2.13
SOX4Q06945 SNORD101-201ENST00000384027 73 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 MIR599-201ENST00000385069 95 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 MIR934-201ENST00000401241 83 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 MIR1323-201ENST00000408090 73 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 RNA5SP247-201ENST00000411181 105 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 RNU6-303P-201ENST00000517091 106 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 MIR4676-201ENST00000583078 72 ntBASIC1.71□□□□□ -2.14
SOX4Q06945 Y_RNA.12-201ENST00000362393 112 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 RNU6-364P-201ENST00000384387 107 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 AL591704.2-201ENST00000421658 181 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 AC008834.1-201ENST00000511612 175 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 RNU6-70P-201ENST00000516438 60 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 YWHAEP2-201ENST00000580066 112 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 MIR4422-201ENST00000581938 83 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 YWHAEP3-201ENST00000582767 121 ntBASIC1.7□□□□□ -2.14
SOX4Q06945 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SOX4Q06945 RNU1-42P-201ENST00000364033 160 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 Y_RNA.207-201ENST00000364142 106 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 RNA5SP245-201ENST00000364239 121 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 RNU6-535P-201ENST00000384722 107 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 AC074348.1-201ENST00000426503 132 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 RNU7-21P-201ENST00000459430 62 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 Y_RNA.681-201ENST00000516445 113 ntBASIC1.69□□□□□ -2.14
SOX4Q06945 MIR3122-201ENST00000577243 73 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 180.6 ms