Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNU6-1125P-201ENST00000363601 107 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 RNU6-480P-201ENST00000384332 107 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 MIR7-2-201ENST00000384970 110 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 RNU7-102P-201ENST00000458948 62 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 RNU6-977P-201ENST00000516411 103 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 RNU6-850P-201ENST00000516934 103 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 MIR548H5-201ENST00000580314 60 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 MIR151B-201ENST00000584249 96 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 MIR6788-201ENST00000618842 66 ntBASIC0.87□□□□□ -2.27
PDLIM4P50479 Y_RNA.342-201ENST00000365352 113 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 Y_RNA.369-201ENST00000365568 117 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 Y_RNA.467-201ENST00000384297 102 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 RNU6-364P-201ENST00000384387 107 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 RNU1-119P-201ENST00000391122 165 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 SNORD100-201ENST00000408573 76 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 RNU6-887P-201ENST00000410660 100 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 SNORD124-201ENST00000459577 104 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 AC025627.3-201ENST00000582078 182 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 MIR548Z-201ENST00000584743 97 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 AC013244.2-201ENST00000603396 103 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 SNORD114-21-201ENST00000606412 72 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 RNU6-86P-201ENST00000606534 107 ntBASIC0.86□□□□□ -2.27
PDLIM4P50479 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
PDLIM4P50479 SNORD58A-201ENST00000383875 65 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 SNORA72.6-201ENST00000384520 129 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 RNU6-644P-201ENST00000391155 98 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 AC015818.7-201ENST00000428754 109 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 AC087499.7-201ENST00000441958 109 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.85□□□□□ -2.27
PDLIM4P50479 RNU6-1223P-201ENST00000517124 104 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 RNA5SP170-201ENST00000517150 101 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.85□□□□□ -2.27
PDLIM4P50479 MALAT1.1-201ENST00000618249 95 ntBASIC0.85□□□□□ -2.27
PDLIM4P50479 Y_RNA.43-201ENST00000362670 111 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 Y_RNA.536-201ENST00000384621 113 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 Y_RNA.540-201ENST00000384638 111 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 MIR520F-201ENST00000384824 87 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 SNORD89-201ENST00000390981 114 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 BX276092.1-201ENST00000427368 251 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 RNA5SP255-201ENST00000516370 107 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 RNU6-448P-201ENST00000517052 107 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 AC008608.1-201ENST00000603910 127 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 AC211469.2-201ENST00000605461 205 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 MIR6857-201ENST00000613267 93 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 MIR6767-201ENST00000637302 66 ntBASIC0.84□□□□□ -2.27
PDLIM4P50479 MIR101-2-201ENST00000362195 79 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 SNORD116-10-201ENST00000363791 102 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 RNU4-38P-201ENST00000364472 129 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 MIR488-201ENST00000365739 83 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 MIR635-201ENST00000384830 98 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 SNORD105-201ENST00000386910 85 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 RPL39P28-201ENST00000465655 155 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 RNU7-61P-201ENST00000515897 61 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 RNA5SP480-201ENST00000516840 109 ntBASIC0.83□□□□□ -2.28
PDLIM4P50479 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
PDLIM4P50479 Y_RNA.174-201ENST00000363781 105 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 Y_RNA.290-201ENST00000364879 114 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 MIR181B2-201ENST00000385004 89 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 MIR532-201ENST00000385025 91 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 MIR548J-201ENST00000408833 112 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 Y_RNA.697-201ENST00000516776 113 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 AC103810.7-201ENST00000607821 91 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 AC022709.1-201ENST00000615967 87 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 U7.3-201ENST00000616123 62 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 MIR6515-201ENST00000619843 57 ntBASIC0.82□□□□□ -2.28
PDLIM4P50479 Y_RNA.57-201ENST00000362806 113 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 SNORD36A-201ENST00000362874 73 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 RNU6-1260P-201ENST00000362944 107 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 Y_RNA.220-201ENST00000364244 109 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 RNU6-291P-201ENST00000384720 107 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 RNU6-1254P-201ENST00000391266 104 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 SNORD63B-201ENST00000411005 70 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 AC092628.1-201ENST00000436250 252 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 AC244505.6-201ENST00000452829 130 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.81□□□□□ -2.28
PDLIM4P50479 AC138907.6-201ENST00000568401 126 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 AC138869.1-201ENST00000568623 124 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 uc_338.16-201ENST00000621804 95 ntBASIC0.81□□□□□ -2.28
PDLIM4P50479 MIR520H-201ENST00000385126 88 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 AC097635.1-201ENST00000450678 155 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 AC002350.1-201ENST00000490759 375 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 TRAJ51-201ENST00000504127 63 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 AL513043.2-201ENST00000573941 143 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 MIR5582-201ENST00000579697 68 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 MIR4661-201ENST00000582720 75 ntBASIC0.8□□□□□ -2.28
PDLIM4P50479 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
PDLIM4P50479 RNU6-535P-201ENST00000384722 107 ntBASIC0.79□□□□□ -2.28
PDLIM4P50479 Y_RNA.648-201ENST00000459455 110 ntBASIC0.79□□□□□ -2.28
PDLIM4P50479 RNU7-106P-201ENST00000459514 67 ntBASIC0.79□□□□□ -2.28
PDLIM4P50479 RNU6-135P-201ENST00000516769 101 ntBASIC0.79□□□□□ -2.28
PDLIM4P50479 RNU6-844P-201ENST00000517175 102 ntBASIC0.79□□□□□ -2.28
PDLIM4P50479 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.79□□□□□ -2.28
PDLIM4P50479 RNU6-1255P-201ENST00000363434 112 ntBASIC0.78□□□□□ -2.28
PDLIM4P50479 MIR516A2-201ENST00000384888 90 ntBASIC0.78□□□□□ -2.28
PDLIM4P50479 MIR573-201ENST00000384964 99 ntBASIC0.78□□□□□ -2.28
PDLIM4P50479 MIR516A1-201ENST00000385033 90 ntBASIC0.78□□□□□ -2.28
PDLIM4P50479 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms