Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 RNU6-972P-201ENST00000391208 107 ntBASIC0.82□□□□□ -2.28
RFX2P48378 SNORD99-201ENST00000408612 74 ntBASIC0.82□□□□□ -2.28
RFX2P48378 RNU7-195P-201ENST00000458793 62 ntBASIC0.82□□□□□ -2.28
RFX2P48378 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.82□□□□□ -2.28
RFX2P48378 RNA5SP458-201ENST00000516188 119 ntBASIC0.82□□□□□ -2.28
RFX2P48378 SNORA31.14-201ENST00000516728 116 ntBASIC0.82□□□□□ -2.28
RFX2P48378 AC025627.3-201ENST00000582078 182 ntBASIC0.82□□□□□ -2.28
RFX2P48378 AL359821.1-201ENST00000605519 182 ntBASIC0.82□□□□□ -2.28
RFX2P48378 MALAT1.1-201ENST00000618249 95 ntBASIC0.82□□□□□ -2.28
RFX2P48378 Y_RNA.96-201ENST00000363092 109 ntBASIC0.81□□□□□ -2.28
RFX2P48378 RNU6-1131P-201ENST00000364955 107 ntBASIC0.81□□□□□ -2.28
RFX2P48378 RNY1P7-201ENST00000384743 110 ntBASIC0.81□□□□□ -2.28
RFX2P48378 MIR573-201ENST00000384964 99 ntBASIC0.81□□□□□ -2.28
RFX2P48378 AP1B1P2-201ENST00000416196 106 ntBASIC0.81□□□□□ -2.28
RFX2P48378 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.81□□□□□ -2.28
RFX2P48378 AC002350.1-201ENST00000490759 375 ntBASIC0.81□□□□□ -2.28
RFX2P48378 AL513043.2-201ENST00000573941 143 ntBASIC0.81□□□□□ -2.28
RFX2P48378 AC011195.1-201ENST00000578177 177 ntBASIC0.81□□□□□ -2.28
RFX2P48378 RNU7-10P-201ENST00000607194 63 ntBASIC0.81□□□□□ -2.28
RFX2P48378 RNA5SP117-201ENST00000365294 118 ntBASIC0.8□□□□□ -2.28
RFX2P48378 SNORD58A-201ENST00000383875 65 ntBASIC0.8□□□□□ -2.28
RFX2P48378 AC087343.1-201ENST00000477341 475 ntBASIC0.8□□□□□ -2.28
RFX2P48378 Y_RNA.694-201ENST00000516677 117 ntBASIC0.8□□□□□ -2.28
RFX2P48378 RNA5SP170-201ENST00000517150 101 ntBASIC0.8□□□□□ -2.28
RFX2P48378 MIR3612-201ENST00000579753 87 ntBASIC0.8□□□□□ -2.28
RFX2P48378 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.8□□□□□ -2.28
RFX2P48378 uc_338.16-201ENST00000621804 95 ntBASIC0.8□□□□□ -2.28
RFX2P48378 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.79□□□□□ -2.28
RFX2P48378 Y_RNA.190-201ENST00000363964 101 ntBASIC0.79□□□□□ -2.28
RFX2P48378 RNU6-49P-201ENST00000384256 107 ntBASIC0.79□□□□□ -2.28
RFX2P48378 MIR146A-201ENST00000385201 99 ntBASIC0.79□□□□□ -2.28
RFX2P48378 MIR644A-201ENST00000385262 94 ntBASIC0.79□□□□□ -2.28
RFX2P48378 RNU6-1254P-201ENST00000391266 104 ntBASIC0.79□□□□□ -2.28
RFX2P48378 AC138907.6-201ENST00000568401 126 ntBASIC0.79□□□□□ -2.28
RFX2P48378 AC138869.1-201ENST00000568623 124 ntBASIC0.79□□□□□ -2.28
RFX2P48378 SNORD36A-201ENST00000362874 73 ntBASIC0.78□□□□□ -2.28
RFX2P48378 MIR599-201ENST00000385069 95 ntBASIC0.78□□□□□ -2.28
RFX2P48378 RNU6-243P-201ENST00000391140 107 ntBASIC0.78□□□□□ -2.28
RFX2P48378 AC244098.3-201ENST00000424803 96 ntBASIC0.78□□□□□ -2.28
RFX2P48378 Y_RNA.809-201ENST00000516058 95 ntBASIC0.78□□□□□ -2.28
RFX2P48378 MIR5582-201ENST00000579697 68 ntBASIC0.78□□□□□ -2.28
RFX2P48378 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.78□□□□□ -2.28
RFX2P48378 Y_RNA.174-201ENST00000363781 105 ntBASIC0.77□□□□□ -2.29
RFX2P48378 Y_RNA.220-201ENST00000364244 109 ntBASIC0.77□□□□□ -2.29
RFX2P48378 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
RFX2P48378 AC097635.1-201ENST00000450678 155 ntBASIC0.77□□□□□ -2.29
RFX2P48378 MIR4661-201ENST00000582720 75 ntBASIC0.77□□□□□ -2.29
RFX2P48378 MIR4769-201ENST00000584126 77 ntBASIC0.77□□□□□ -2.29
RFX2P48378 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.77□□□□□ -2.29
RFX2P48378 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.77□□□□□ -2.29
RFX2P48378 SNORD116-10-201ENST00000363791 102 ntBASIC0.76□□□□□ -2.29
RFX2P48378 AL161932.1-201ENST00000437408 146 ntBASIC0.76□□□□□ -2.29
RFX2P48378 snoU13.11-201ENST00000459219 104 ntBASIC0.76□□□□□ -2.29
RFX2P48378 ACA64.5-201ENST00000516207 127 ntBASIC0.76□□□□□ -2.29
RFX2P48378 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.76□□□□□ -2.29
RFX2P48378 AL353765.1-201ENST00000605514 183 ntBASIC0.76□□□□□ -2.29
RFX2P48378 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
RFX2P48378 Y_RNA.221-201ENST00000364248 96 ntBASIC0.75□□□□□ -2.29
RFX2P48378 RNU6-524P-201ENST00000384270 107 ntBASIC0.75□□□□□ -2.29
RFX2P48378 MIR519A1-201ENST00000385257 85 ntBASIC0.75□□□□□ -2.29
RFX2P48378 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.75□□□□□ -2.29
RFX2P48378 RNA5SP222-201ENST00000411039 105 ntBASIC0.75□□□□□ -2.29
RFX2P48378 snoU13.31-201ENST00000607291 104 ntBASIC0.75□□□□□ -2.29
RFX2P48378 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.74□□□□□ -2.29
RFX2P48378 RNU6-1260P-201ENST00000362944 107 ntBASIC0.74□□□□□ -2.29
RFX2P48378 SNORD115-24-201ENST00000363528 82 ntBASIC0.74□□□□□ -2.29
RFX2P48378 Y_RNA.327-201ENST00000365201 102 ntBASIC0.74□□□□□ -2.29
RFX2P48378 AC244505.6-201ENST00000452829 130 ntBASIC0.74□□□□□ -2.29
RFX2P48378 RNU6-469P-201ENST00000516253 101 ntBASIC0.74□□□□□ -2.29
RFX2P48378 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.74□□□□□ -2.29
RFX2P48378 MIR3678-201ENST00000578455 94 ntBASIC0.74□□□□□ -2.29
RFX2P48378 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.74□□□□□ -2.29
RFX2P48378 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.74□□□□□ -2.29
RFX2P48378 MIR18A-201ENST00000362310 71 ntBASIC0.73□□□□□ -2.29
RFX2P48378 RNU6-1255P-201ENST00000363434 112 ntBASIC0.73□□□□□ -2.29
RFX2P48378 Y_RNA.609-201ENST00000410669 89 ntBASIC0.73□□□□□ -2.29
RFX2P48378 AL606490.4-201ENST00000423117 127 ntBASIC0.73□□□□□ -2.29
RFX2P48378 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.73□□□□□ -2.29
RFX2P48378 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
RFX2P48378 RNU6-957P-201ENST00000363652 99 ntBASIC0.72□□□□□ -2.29
RFX2P48378 MIR608-201ENST00000384820 100 ntBASIC0.72□□□□□ -2.29
RFX2P48378 Y_RNA.648-201ENST00000459455 110 ntBASIC0.72□□□□□ -2.29
RFX2P48378 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.72□□□□□ -2.29
RFX2P48378 RNU6-237P-201ENST00000515985 71 ntBASIC0.72□□□□□ -2.29
RFX2P48378 RNU6-844P-201ENST00000517175 102 ntBASIC0.72□□□□□ -2.29
RFX2P48378 AC026421.1-201ENST00000519101 163 ntBASIC0.72□□□□□ -2.29
RFX2P48378 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
RFX2P48378 Y_RNA.43-201ENST00000362670 111 ntBASIC0.71□□□□□ -2.3
RFX2P48378 Y_RNA.283-201ENST00000364798 112 ntBASIC0.71□□□□□ -2.3
RFX2P48378 Y_RNA.369-201ENST00000365568 117 ntBASIC0.71□□□□□ -2.3
RFX2P48378 RNY1P8-201ENST00000383970 114 ntBASIC0.71□□□□□ -2.3
RFX2P48378 RNU6-466P-201ENST00000391224 103 ntBASIC0.71□□□□□ -2.3
RFX2P48378 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
RFX2P48378 RNU6-519P-201ENST00000410590 108 ntBASIC0.71□□□□□ -2.3
RFX2P48378 RNU7-85P-201ENST00000458851 63 ntBASIC0.71□□□□□ -2.3
RFX2P48378 AC211469.2-201ENST00000605461 205 ntBASIC0.71□□□□□ -2.3
RFX2P48378 TRDV1-202ENST00000621643 102 ntBASIC0.71□□□□□ -2.3
RFX2P48378 SNORD18A-201ENST00000363753 72 ntBASIC0.7□□□□□ -2.3
RFX2P48378 RNU6-294P-201ENST00000364999 102 ntBASIC0.7□□□□□ -2.3
RFX2P48378 RNU6-1134P-201ENST00000365156 101 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms