Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR4661-201ENST00000582720 75 ntBASIC0.85□□□□□ -2.27
HOXD3P31249 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.85□□□□□ -2.27
HOXD3P31249 MIR6788-201ENST00000618842 66 ntBASIC0.85□□□□□ -2.27
HOXD3P31249 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
HOXD3P31249 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.84□□□□□ -2.27
HOXD3P31249 Y_RNA.10-201ENST00000362371 110 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 SNORD45B-201ENST00000364617 72 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 Y_RNA.348-201ENST00000365403 103 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-32P-201ENST00000383948 107 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-13P-201ENST00000384248 107 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 SNORD38.2-201ENST00000384470 69 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-12P-201ENST00000384604 107 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 Y_RNA.536-201ENST00000384621 113 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-291P-201ENST00000384720 107 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-41P-201ENST00000384741 107 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-644P-201ENST00000391155 98 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 MIR1285-1-201ENST00000408593 84 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 SNORD99-201ENST00000408612 74 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 SNRPGP12-201ENST00000449481 213 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU7-106P-201ENST00000459514 67 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 TRAJ51-201ENST00000504127 63 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 RNU6-1194P-201ENST00000516208 104 ntBASIC0.84□□□□□ -2.27
HOXD3P31249 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.84□□□□□ -2.28
HOXD3P31249 RNU6-905P-201ENST00000384434 107 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 RNU6-535P-201ENST00000384722 107 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 MIR516A2-201ENST00000384888 90 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 MIR181B2-201ENST00000385004 89 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 MIR516A1-201ENST00000385033 90 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 RNU7-61P-201ENST00000515897 61 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 RNU6-765P-201ENST00000516916 99 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 RNU6-448P-201ENST00000517052 107 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 AL136317.1-201ENST00000612653 226 ntBASIC0.83□□□□□ -2.28
HOXD3P31249 Y_RNA.544-201ENST00000384650 113 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 MIR598-201ENST00000384868 97 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 MTATP6P29-201ENST00000415057 132 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 AC004941.2-201ENST00000427009 228 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 MTATP8P2-201ENST00000435212 202 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 RNU6-162P-201ENST00000516228 103 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 SNORA31.14-201ENST00000516728 116 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 AC103810.7-201ENST00000607821 91 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 Y_RNA.818-201ENST00000618813 71 ntBASIC0.82□□□□□ -2.28
HOXD3P31249 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.82□□□□□ -2.28
HOXD3P31249 Y_RNA.93-201ENST00000363066 109 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 Y_RNA.107-201ENST00000363190 121 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 RNU6-640P-201ENST00000363693 105 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 MIR635-201ENST00000384830 98 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 AC002350.1-201ENST00000490759 375 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 Y_RNA.677-201ENST00000516401 85 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 AC011195.1-201ENST00000578177 177 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 AC025627.3-201ENST00000582078 182 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 PVT1_3.1-201ENST00000620853 95 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 uc_338.16-201ENST00000621804 95 ntBASIC0.81□□□□□ -2.28
HOXD3P31249 Y_RNA.32-201ENST00000362589 110 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 Y_RNA.56-201ENST00000362798 112 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 RNU6-1244P-201ENST00000363614 108 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 Y_RNA.342-201ENST00000365352 113 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 RNU6-571P-201ENST00000384128 107 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 MIR644A-201ENST00000385262 94 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 SNORD63B-201ENST00000411005 70 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 AC092628.1-201ENST00000436250 252 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 RNA5SP436-201ENST00000516020 115 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 ACA64.5-201ENST00000516207 127 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 SNORD114-21-201ENST00000606412 72 ntBASIC0.8□□□□□ -2.28
HOXD3P31249 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.8□□□□□ -2.28
HOXD3P31249 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
HOXD3P31249 Y_RNA.57-201ENST00000362806 113 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 Y_RNA.374-201ENST00000365606 101 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 RNU6-813P-201ENST00000384691 107 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 AC244098.3-201ENST00000424803 96 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 RNU7-195P-201ENST00000458793 62 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 SNORA40.13-201ENST00000516379 120 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.79□□□□□ -2.28
HOXD3P31249 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 AC025521.1-201ENST00000621624 286 ntBASIC0.79□□□□□ -2.28
HOXD3P31249 Y_RNA.205-201ENST00000364128 113 ntBASIC0.78□□□□□ -2.28
HOXD3P31249 MIR488-201ENST00000365739 83 ntBASIC0.78□□□□□ -2.28
HOXD3P31249 MIR573-201ENST00000384964 99 ntBASIC0.78□□□□□ -2.28
HOXD3P31249 MIR3612-201ENST00000579753 87 ntBASIC0.78□□□□□ -2.28
HOXD3P31249 MIR548H5-201ENST00000580314 60 ntBASIC0.78□□□□□ -2.28
HOXD3P31249 AC211469.2-201ENST00000605461 205 ntBASIC0.78□□□□□ -2.28
HOXD3P31249 SNORD36A-201ENST00000362874 73 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 Y_RNA.190-201ENST00000363964 101 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 RNU4-38P-201ENST00000364472 129 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 RNA5SP117-201ENST00000365294 118 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 AP003327.1-201ENST00000529684 127 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 AL513043.2-201ENST00000573941 143 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 MIR4439-201ENST00000583746 80 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 U7.3-201ENST00000616123 62 ntBASIC0.77□□□□□ -2.29
HOXD3P31249 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
HOXD3P31249 Y_RNA.290-201ENST00000364879 114 ntBASIC0.76□□□□□ -2.29
HOXD3P31249 RNY4P30-201ENST00000410216 95 ntBASIC0.76□□□□□ -2.29
HOXD3P31249 AL353765.1-201ENST00000605514 183 ntBASIC0.76□□□□□ -2.29
HOXD3P31249 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.76□□□□□ -2.29
HOXD3P31249 RNU6-1125P-201ENST00000363601 107 ntBASIC0.75□□□□□ -2.29
HOXD3P31249 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
HOXD3P31249 SNORD58A-201ENST00000383875 65 ntBASIC0.75□□□□□ -2.29
HOXD3P31249 RNU6-480P-201ENST00000384332 107 ntBASIC0.75□□□□□ -2.29
HOXD3P31249 RNY1P7-201ENST00000384743 110 ntBASIC0.75□□□□□ -2.29
HOXD3P31249 RNU6-887P-201ENST00000410660 100 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 192.7 ms