Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR1257-201ENST00000408490 117 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 RNU6-955P-201ENST00000410497 104 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 BX276092.1-201ENST00000427368 251 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 SNORA31.2-201ENST00000516019 134 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 MIR4491-201ENST00000581087 68 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 MIR151B-201ENST00000584249 96 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 AC023934.1-201ENST00000574529 2389 ntBASIC1.49□□□□□ -2.17
COL6A1P12109 RNU6-403P-201ENST00000363163 104 ntBASIC1.49□□□□□ -2.17
COL6A1P12109 SNORD114-27-201ENST00000363766 70 ntBASIC1.49□□□□□ -2.17
COL6A1P12109 Y_RNA.426-201ENST00000384068 113 ntBASIC1.49□□□□□ -2.17
COL6A1P12109 RNU6-519P-201ENST00000410590 108 ntBASIC1.49□□□□□ -2.17
COL6A1P12109 MIR5588-201ENST00000581890 63 ntBASIC1.49□□□□□ -2.17
COL6A1P12109 Y_RNA.36-201ENST00000362602 112 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU6-633P-201ENST00000362612 103 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU6-509P-201ENST00000363519 107 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 MIR320A-201ENST00000385302 82 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 SNORD78.1-201ENST00000390866 65 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 MIR548J-201ENST00000408833 112 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU4-83P-201ENST00000410863 133 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 AL591704.2-201ENST00000421658 181 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU7-185P-201ENST00000459215 60 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 Y_RNA.685-201ENST00000516532 108 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 RNU6-531P-201ENST00000516694 104 ntBASIC1.48□□□□□ -2.17
COL6A1P12109 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
COL6A1P12109 RNU6-979P-201ENST00000383896 107 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 Y_RNA.588-201ENST00000391254 102 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 SNORD111-201ENST00000408139 94 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 Y_RNA.611-201ENST00000410682 108 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 RNU6-1194P-201ENST00000516208 104 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 SNORA25.16-201ENST00000516741 121 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 AC020891.4-201ENST00000605745 93 ntBASIC1.47□□□□□ -2.17
COL6A1P12109 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.47□□□□□ -2.17
COL6A1P12109 MIR101-2-201ENST00000362195 79 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 RNU6-934P-201ENST00000365154 107 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 SNORA80D-201ENST00000384488 135 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 SNORA75.2-201ENST00000391138 150 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 SNORA75.3-201ENST00000391231 150 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 SNORA70.22-201ENST00000517160 124 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 AC036111.3-201ENST00000526389 112 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 RNU7-10P-201ENST00000607194 63 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.46□□□□□ -2.18
COL6A1P12109 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.46□□□□□ -2.18
COL6A1P12109 SNORA25-201ENST00000384384 134 ntBASIC1.45□□□□□ -2.18
COL6A1P12109 RNU6-1275P-201ENST00000391087 107 ntBASIC1.45□□□□□ -2.18
COL6A1P12109 SNORD83.1-201ENST00000411362 77 ntBASIC1.45□□□□□ -2.18
COL6A1P12109 RNU7-171P-201ENST00000459581 62 ntBASIC1.45□□□□□ -2.18
COL6A1P12109 MIR548BB-201ENST00000626714 66 ntBASIC1.45□□□□□ -2.18
COL6A1P12109 RNU6-1124P-201ENST00000384169 107 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 MIR519C-201ENST00000385053 87 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 RNU6-243P-201ENST00000391140 107 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 RNU6-1254P-201ENST00000391266 104 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 Y_RNA.648-201ENST00000459455 110 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 MIR4771-2-201ENST00000577758 74 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 MIR4771-1-201ENST00000582617 74 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 AC106800.4-201ENST00000614905 153 ntBASIC1.44□□□□□ -2.18
COL6A1P12109 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A1P12109 SNORD115-37-201ENST00000363768 82 ntBASIC1.43□□□□□ -2.18
COL6A1P12109 snoU13.21-201ENST00000459368 105 ntBASIC1.43□□□□□ -2.18
COL6A1P12109 MIR548H5-201ENST00000580314 60 ntBASIC1.43□□□□□ -2.18
COL6A1P12109 MIR6082-201ENST00000613604 109 ntBASIC1.43□□□□□ -2.18
COL6A1P12109 MIR125B2-201ENST00000385128 89 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
COL6A1P12109 RNU6-910P-201ENST00000390844 107 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 RNU7-90P-201ENST00000459216 62 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 RNU7-21P-201ENST00000459430 62 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 RNU6-765P-201ENST00000516916 99 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 AC023827.1-201ENST00000569247 97 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 AC006160.2-201ENST00000637708 154 ntBASIC1.42□□□□□ -2.18
COL6A1P12109 Y_RNA.13-201ENST00000362403 112 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 Y_RNA.205-201ENST00000364128 113 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 Y_RNA.363-201ENST00000365529 113 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 MIR635-201ENST00000384830 98 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 MIR516A2-201ENST00000384888 90 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 MIR516A1-201ENST00000385033 90 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 SNORD100-201ENST00000408573 76 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 RNU6-994P-201ENST00000410507 111 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 Y_RNA.607-201ENST00000410597 98 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 RNU6-638P-201ENST00000516582 104 ntBASIC1.41□□□□□ -2.18
COL6A1P12109 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
COL6A1P12109 RNU6-228P-201ENST00000362700 106 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 Y_RNA.437-201ENST00000384113 113 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 MIR758-201ENST00000390227 88 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 MIR1236-201ENST00000408340 102 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 SNORD63B-201ENST00000411005 70 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 RPS26P5-201ENST00000418544 335 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 AC087499.7-201ENST00000441958 109 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 SNORD4B-201ENST00000459083 72 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 MIR4666B-201ENST00000578142 81 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 AC013244.2-201ENST00000603396 103 ntBASIC1.4□□□□□ -2.19
COL6A1P12109 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.4□□□□□ -2.19
COL6A1P12109 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
COL6A1P12109 SNORD36A-201ENST00000362874 73 ntBASIC1.39□□□□□ -2.19
COL6A1P12109 RNU6-466P-201ENST00000391224 103 ntBASIC1.39□□□□□ -2.19
COL6A1P12109 AC093729.1-201ENST00000513074 128 ntBASIC1.39□□□□□ -2.19
COL6A1P12109 RNA5SP436-201ENST00000516020 115 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms