Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RNU6-429P-201ENST00000384582 108 ntBASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 MIR489-201ENST00000384923 84 ntBASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-679P-201ENST00000391003 106 ntBASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-733P-201ENST00000410759 104 ntBASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 AP003327.1-201ENST00000529684 127 ntBASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 MIR376B-201ENST00000614515 100 ntBASIC0.99□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-1313P-201ENST00000362622 102 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-1290P-201ENST00000362957 109 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 Y_RNA.155-201ENST00000363632 101 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 SNORA72.6-201ENST00000384520 129 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 SNORA7.5-201ENST00000410672 110 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 AL353813.1-201ENST00000440700 253 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 MIR5009-201ENST00000578736 100 ntBASIC0.98□□□□□ -2.25
PCDHA1Q9Y5I3 U8.6-201ENST00000364939 135 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 Y_RNA.323-201ENST00000365157 109 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 Y_RNA.360-201ENST00000365512 102 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-589P-201ENST00000516485 107 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-531P-201ENST00000516694 104 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 RNU6-448P-201ENST00000517052 107 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 DEFB131E-201ENST00000532329 154 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 AL353765.1-201ENST00000605514 183 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 AC022709.1-201ENST00000615967 87 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 MIR6129-201ENST00000616087 109 ntBASIC0.97□□□□□ -2.25
PCDHA1Q9Y5I3 MIR34C-201ENST00000384831 77 ntBASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 MIR605-201ENST00000385078 83 ntBASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 SNORD100-201ENST00000408573 76 ntBASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 SNORD99-201ENST00000408612 74 ntBASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 CYP3A137P-201ENST00000562436 69 ntBASIC0.96□□□□□ -2.26
PCDHA1Q9Y5I3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.95□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-1107P-201ENST00000364817 104 ntBASIC0.95□□□□□ -2.26
PCDHA1Q9Y5I3 MIR608-201ENST00000384820 100 ntBASIC0.95□□□□□ -2.26
PCDHA1Q9Y5I3 MIR573-201ENST00000384964 99 ntBASIC0.95□□□□□ -2.26
PCDHA1Q9Y5I3 AC013244.2-201ENST00000603396 103 ntBASIC0.95□□□□□ -2.26
PCDHA1Q9Y5I3 AL512310.12-203ENST00000640543 90 ntBASIC0.95□□□□□ -2.26
PCDHA1Q9Y5I3 HSBP1P2-201ENST00000299671 229 ntBASIC0.94□□□□□ -2.26
PCDHA1Q9Y5I3 SNORD38.2-201ENST00000384470 69 ntBASIC0.94□□□□□ -2.26
PCDHA1Q9Y5I3 AC002350.1-201ENST00000490759 375 ntBASIC0.94□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-1006P-201ENST00000516998 103 ntBASIC0.94□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 Y_RNA.377-201ENST00000365644 108 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-1201P-201ENST00000384227 107 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 AC244098.3-201ENST00000424803 96 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 Y_RNA.709-201ENST00000516952 92 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 MIR4694-201ENST00000578534 80 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 MIR4500-201ENST00000579472 76 ntBASIC0.93□□□□□ -2.26
PCDHA1Q9Y5I3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 SNORD114-2-201ENST00000363953 78 ntBASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-1325P-201ENST00000364905 105 ntBASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-1014P-201ENST00000383940 103 ntBASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 Y_RNA.536-201ENST00000384621 113 ntBASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6-351P-201ENST00000516097 100 ntBASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 AL442128.1-201ENST00000615151 90 ntBASIC0.92□□□□□ -2.26
PCDHA1Q9Y5I3 Y_RNA.56-201ENST00000362798 112 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 SNORD38.1-201ENST00000363863 68 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 AC004941.2-201ENST00000427009 228 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 ACA64.5-201ENST00000516207 127 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 Y_RNA.697-201ENST00000516776 113 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 MIR5000-201ENST00000577717 103 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 AC011195.1-201ENST00000578177 177 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 MIR6515-201ENST00000619843 57 ntBASIC0.91□□□□□ -2.26
PCDHA1Q9Y5I3 MIR101-2-201ENST00000362195 79 ntBASIC0.9□□□□□ -2.27
PCDHA1Q9Y5I3 RNY3P2-201ENST00000362918 102 ntBASIC0.9□□□□□ -2.27
PCDHA1Q9Y5I3 Y_RNA.174-201ENST00000363781 105 ntBASIC0.9□□□□□ -2.27
PCDHA1Q9Y5I3 MIR577-201ENST00000385196 96 ntBASIC0.9□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-1099P-201ENST00000363533 107 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-215P-201ENST00000365169 102 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 RNA5SP117-201ENST00000365294 118 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 RNU4-45P-201ENST00000365469 141 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-291P-201ENST00000384720 107 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 MIR3612-201ENST00000579753 87 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 MIR548H5-201ENST00000580314 60 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 RNU7-10P-201ENST00000607194 63 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 uc_338.16-201ENST00000621804 95 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.89□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-832P-201ENST00000363319 107 ntBASIC0.88□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-571P-201ENST00000384128 107 ntBASIC0.88□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-535P-201ENST00000384722 107 ntBASIC0.88□□□□□ -2.27
PCDHA1Q9Y5I3 SNRPGP12-201ENST00000449481 213 ntBASIC0.88□□□□□ -2.27
PCDHA1Q9Y5I3 AC096720.1-201ENST00000604441 183 ntBASIC0.88□□□□□ -2.27
PCDHA1Q9Y5I3 Y_RNA.78-201ENST00000362970 110 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 Y_RNA.247-201ENST00000364500 92 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 SNORD20-201ENST00000384550 80 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 RNY4P18-201ENST00000391107 89 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-90P-201ENST00000606352 106 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 MIR6866-201ENST00000638146 69 ntBASIC0.87□□□□□ -2.27
PCDHA1Q9Y5I3 RNU6-110P-201ENST00000384508 104 ntBASIC0.86□□□□□ -2.27
PCDHA1Q9Y5I3 MIR548G-201ENST00000408442 89 ntBASIC0.86□□□□□ -2.27
PCDHA1Q9Y5I3 AC141557.1-201ENST00000540982 400 ntBASIC0.86□□□□□ -2.27
PCDHA1Q9Y5I3 MIR6835-201ENST00000621552 64 ntBASIC0.86□□□□□ -2.27
PCDHA1Q9Y5I3 MIR18A-201ENST00000362310 71 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 195.4 ms