Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 Y_RNA.213-201ENST00000364178 111 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 MIR206-201ENST00000384872 86 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 PCNPP3-201ENST00000393579 471 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 AC108059.2-201ENST00000434626 151 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 RNU6-863P-201ENST00000515989 104 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 MIR3163-201ENST00000581592 73 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 U7.2-201ENST00000607576 63 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 AC091304.10-201ENST00000641554 121 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 RNU6-1321P-201ENST00000390905 107 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 RNA5SP136-201ENST00000410906 107 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 RNU7-2P-201ENST00000516096 62 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 RNU7-6P-201ENST00000516845 62 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 SCARNA16.5-201ENST00000517114 183 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 AC138869.1-201ENST00000568623 124 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 MIR4500-201ENST00000579472 76 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 MIR3671-201ENST00000580455 88 ntBASIC0.37□□□□□ -2.35
KDM3AQ9Y4C1 SNORD28-201ENST00000384706 75 ntBASIC0.36□□□□□ -2.35
KDM3AQ9Y4C1 SUMO1P3-201ENST00000439961 304 ntBASIC0.36□□□□□ -2.35
KDM3AQ9Y4C1 RN7SKP19-201ENST00000516016 252 ntBASIC0.36□□□□□ -2.35
KDM3AQ9Y4C1 AC023932.2-201ENST00000603176 175 ntBASIC0.36□□□□□ -2.35
KDM3AQ9Y4C1 AP001362.1-201ENST00000625165 124 ntBASIC0.36□□□□□ -2.35
KDM3AQ9Y4C1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
KDM3AQ9Y4C1 RNU6-1104P-201ENST00000384723 104 ntBASIC0.35□□□□□ -2.35
KDM3AQ9Y4C1 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
KDM3AQ9Y4C1 SNORA36.1-201ENST00000363424 132 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.343-201ENST00000365354 112 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.464-201ENST00000384282 110 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 RNU6-616P-201ENST00000384353 107 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 MIR635-201ENST00000384830 98 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 MIR569-201ENST00000385228 96 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 RNU2-59P-201ENST00000410482 191 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 MIR1270-201ENST00000459320 83 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 SNORA62.5-201ENST00000516634 120 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 RNA5SP47-201ENST00000517230 109 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 AC244669.1-204ENST00000621564 178 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 AC021753.1-201ENST00000635724 168 ntBASIC0.34□□□□□ -2.36
KDM3AQ9Y4C1 SNORD44.1-201ENST00000363202 61 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.180-201ENST00000363867 113 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 SNORD115-35-201ENST00000365122 82 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.328-201ENST00000365208 113 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 RNA5SP63-201ENST00000391225 112 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 MIR1263-201ENST00000408324 86 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 SNRPGP12-201ENST00000449481 213 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 TUG1_4.1-201ENST00000619464 181 ntBASIC0.33□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.49-201ENST00000362714 112 ntBASIC0.32□□□□□ -2.36
KDM3AQ9Y4C1 SNORA63.5-201ENST00000363548 123 ntBASIC0.32□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.198-201ENST00000364013 98 ntBASIC0.32□□□□□ -2.36
KDM3AQ9Y4C1 MIR548L-201ENST00000408303 86 ntBASIC0.32□□□□□ -2.36
KDM3AQ9Y4C1 MTND5P41-201ENST00000517498 206 ntBASIC0.32□□□□□ -2.36
KDM3AQ9Y4C1 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.31□□□□□ -2.36
KDM3AQ9Y4C1 SNORD115-24-201ENST00000363528 82 ntBASIC0.31□□□□□ -2.36
KDM3AQ9Y4C1 AL158147.1-201ENST00000443970 75 ntBASIC0.31□□□□□ -2.36
KDM3AQ9Y4C1 RNA5SP395-201ENST00000516567 118 ntBASIC0.31□□□□□ -2.36
KDM3AQ9Y4C1 MIR3668-201ENST00000582138 75 ntBASIC0.31□□□□□ -2.36
KDM3AQ9Y4C1 MIR6828-201ENST00000636181 60 ntBASIC0.31□□□□□ -2.36
KDM3AQ9Y4C1 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 RNA5SP245-201ENST00000364239 121 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 RNU4-67P-201ENST00000364569 141 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.280-201ENST00000364765 112 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.294-201ENST00000364916 102 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 MIR6718-201ENST00000616153 80 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 AC067863.3-201ENST00000624172 122 ntBASIC0.3□□□□□ -2.36
KDM3AQ9Y4C1 SNORD38.2-201ENST00000384470 69 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 MIR548I2-201ENST00000408348 149 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 AC073261.1-201ENST00000429409 121 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 AC244505.6-201ENST00000452829 130 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 RNU6-426P-201ENST00000516464 97 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 IGKV1-22-201ENST00000524313 326 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 MIR7107-201ENST00000611489 80 ntBASIC0.29□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.127-201ENST00000363386 109 ntBASIC0.28□□□□□ -2.36
KDM3AQ9Y4C1 Y_RNA.528-201ENST00000384575 108 ntBASIC0.28□□□□□ -2.36
KDM3AQ9Y4C1 RNU7-200P-201ENST00000516105 62 ntBASIC0.28□□□□□ -2.36
KDM3AQ9Y4C1 SNORD115-19-201ENST00000363098 82 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 SNORD115-18-201ENST00000363293 82 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 Y_RNA.170-201ENST00000363746 110 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 SNORD115-17-201ENST00000364612 82 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 SNORA40-201ENST00000388090 126 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 RNA5SP476-201ENST00000516613 103 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 AC087741.2-201ENST00000619415 172 ntBASIC0.27□□□□□ -2.37
KDM3AQ9Y4C1 BX276092.1-201ENST00000427368 251 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 AC069271.1-201ENST00000445577 156 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 RNU6-1061P-201ENST00000516530 99 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 RNU6-521P-201ENST00000516663 105 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 RNU6-1212P-201ENST00000517023 104 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 MIR376B-201ENST00000614515 100 ntBASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.25□□□□□ -2.37
KDM3AQ9Y4C1 RNU6-1126P-201ENST00000384002 107 ntBASIC0.24□□□□□ -2.37
KDM3AQ9Y4C1 AC097635.1-201ENST00000450678 155 ntBASIC0.24□□□□□ -2.37
KDM3AQ9Y4C1 AC108740.1-201ENST00000498629 225 ntBASIC0.24□□□□□ -2.37
KDM3AQ9Y4C1 RNA5SP272-201ENST00000516095 111 ntBASIC0.24□□□□□ -2.37
KDM3AQ9Y4C1 Y_RNA.360-201ENST00000365512 102 ntBASIC0.23□□□□□ -2.37
KDM3AQ9Y4C1 Y_RNA.423-201ENST00000384057 113 ntBASIC0.23□□□□□ -2.37
KDM3AQ9Y4C1 MIR599-201ENST00000385069 95 ntBASIC0.23□□□□□ -2.37
KDM3AQ9Y4C1 RNU7-104P-201ENST00000459398 79 ntBASIC0.23□□□□□ -2.37
KDM3AQ9Y4C1 AC025166.1-201ENST00000612411 163 ntBASIC0.23□□□□□ -2.37
KDM3AQ9Y4C1 SNORA9.1-201ENST00000362412 131 ntBASIC0.22□□□□□ -2.37
KDM3AQ9Y4C1 RNU6-235P-201ENST00000362644 107 ntBASIC0.22□□□□□ -2.37
KDM3AQ9Y4C1 RNU6-170P-201ENST00000362832 104 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms