Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.13□□□□□ -2.07
CHMP3Q9Y3E7 SNORD36A-201ENST00000362874 73 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 SNORD83.1-201ENST00000411362 77 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 AC108667.1-201ENST00000428618 249 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 RNU7-106P-201ENST00000459514 67 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 AC048334.1-201ENST00000477975 159 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 AL512310.8-201ENST00000550183 120 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 MIR4712-201ENST00000583750 82 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 AL512598.1-201ENST00000610158 273 ntBASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CHMP3Q9Y3E7 SNORD115-37-201ENST00000363768 82 ntBASIC2.11□□□□□ -2.07
CHMP3Q9Y3E7 Y_RNA.648-201ENST00000459455 110 ntBASIC2.11□□□□□ -2.07
CHMP3Q9Y3E7 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
CHMP3Q9Y3E7 AC023934.1-201ENST00000574529 2389 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 Y_RNA.330-201ENST00000365230 109 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 MIR1236-201ENST00000408340 102 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 RPS27P16-201ENST00000425758 201 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 AL603825.1-201ENST00000438481 80 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 MIR18B-201ENST00000454574 71 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 SNORA25.13-201ENST00000516395 103 ntBASIC2.1□□□□□ -2.07
CHMP3Q9Y3E7 RNU4-58P-201ENST00000363192 141 ntBASIC2.09□□□□□ -2.07
CHMP3Q9Y3E7 RNU6-1065P-201ENST00000384513 106 ntBASIC2.09□□□□□ -2.07
CHMP3Q9Y3E7 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
CHMP3Q9Y3E7 MIR889-201ENST00000401280 79 ntBASIC2.09□□□□□ -2.07
CHMP3Q9Y3E7 RNU7-185P-201ENST00000459215 60 ntBASIC2.09□□□□□ -2.07
CHMP3Q9Y3E7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CHMP3Q9Y3E7 SNORA75.2-201ENST00000391138 150 ntBASIC2.08□□□□□ -2.08
CHMP3Q9Y3E7 SNORA75.3-201ENST00000391231 150 ntBASIC2.08□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-1254P-201ENST00000391266 104 ntBASIC2.08□□□□□ -2.08
CHMP3Q9Y3E7 AC013244.2-201ENST00000603396 103 ntBASIC2.08□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-53P-201ENST00000365367 106 ntBASIC2.07□□□□□ -2.08
CHMP3Q9Y3E7 Y_RNA.363-201ENST00000365529 113 ntBASIC2.07□□□□□ -2.08
CHMP3Q9Y3E7 Y_RNA.508-201ENST00000384502 114 ntBASIC2.07□□□□□ -2.08
CHMP3Q9Y3E7 RNA5SP292-201ENST00000390974 118 ntBASIC2.07□□□□□ -2.08
CHMP3Q9Y3E7 SNORD63B-201ENST00000411005 70 ntBASIC2.07□□□□□ -2.08
CHMP3Q9Y3E7 MIR4303-201ENST00000581299 66 ntBASIC2.07□□□□□ -2.08
CHMP3Q9Y3E7 Y_RNA.13-201ENST00000362403 112 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-243P-201ENST00000391140 107 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 SNORD100-201ENST00000408573 76 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 AL450471.1-201ENST00000447509 127 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 AC008834.1-201ENST00000511612 175 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-75P-201ENST00000515944 104 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 SNORA44.1-201ENST00000517031 108 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 AC012493.3-201ENST00000604494 112 ntBASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CHMP3Q9Y3E7 Y_RNA.283-201ENST00000364798 112 ntBASIC2.05□□□□□ -2.08
CHMP3Q9Y3E7 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.05□□□□□ -2.08
CHMP3Q9Y3E7 TRAJ51-201ENST00000504127 63 ntBASIC2.05□□□□□ -2.08
CHMP3Q9Y3E7 AC036111.3-201ENST00000526389 112 ntBASIC2.05□□□□□ -2.08
CHMP3Q9Y3E7 AC019288.1-201ENST00000557918 224 ntBASIC2.05□□□□□ -2.08
CHMP3Q9Y3E7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CHMP3Q9Y3E7 SNORD33-201ENST00000362761 85 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-478P-201ENST00000363904 110 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-132P-201ENST00000383863 107 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-1296P-201ENST00000383879 107 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 MIR1257-201ENST00000408490 117 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 SNORA31.2-201ENST00000516019 134 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 RN7SKP88-201ENST00000516847 250 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 MIR3122-201ENST00000577243 73 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 MIR4536-1-201ENST00000583537 88 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 7SK.8-201ENST00000612110 250 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 7SK.11-201ENST00000615477 250 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 7SK.13-201ENST00000622040 250 ntBASIC2.04□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-957P-201ENST00000363652 99 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-776P-201ENST00000364403 104 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 SNORD48-201ENST00000364953 64 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-1022P-201ENST00000365049 104 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 RNA5SP363-201ENST00000365072 115 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 RNU6-1054P-201ENST00000411293 104 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 AC023827.1-201ENST00000569247 97 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 MIR4771-2-201ENST00000577758 74 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 MIR4771-1-201ENST00000582617 74 ntBASIC2.03□□□□□ -2.08
CHMP3Q9Y3E7 SNORD113.3-201ENST00000364630 78 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-934P-201ENST00000365154 107 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-811P-201ENST00000384069 107 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 Y_RNA.536-201ENST00000384621 113 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 MIR934-201ENST00000401241 83 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 RNU4-62P-201ENST00000410125 130 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 RNU7-195P-201ENST00000458793 62 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-65P-201ENST00000516332 98 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 MIR3198-2-201ENST00000577868 80 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 MIR4796-201ENST00000580742 81 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 MIR6082-201ENST00000613604 109 ntBASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CHMP3Q9Y3E7 MIR101-2-201ENST00000362195 79 ntBASIC2.01□□□□□ -2.09
CHMP3Q9Y3E7 Y_RNA.338-201ENST00000365320 114 ntBASIC2.01□□□□□ -2.09
CHMP3Q9Y3E7 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.01□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-1194P-201ENST00000516208 104 ntBASIC2.01□□□□□ -2.09
CHMP3Q9Y3E7 SNORD53B-201ENST00000577887 78 ntBASIC2.01□□□□□ -2.09
CHMP3Q9Y3E7 MIR4285-201ENST00000581001 85 ntBASIC2.01□□□□□ -2.09
CHMP3Q9Y3E7 MIR378A-201ENST00000362177 66 ntBASIC2□□□□□ -2.09
CHMP3Q9Y3E7 MIRLET7F1-201ENST00000362202 87 ntBASIC2□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-129P-201ENST00000391022 107 ntBASIC2□□□□□ -2.09
CHMP3Q9Y3E7 AL606490.4-201ENST00000423117 127 ntBASIC2□□□□□ -2.09
CHMP3Q9Y3E7 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-624P-201ENST00000363411 107 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 RNU6-466P-201ENST00000391224 103 ntBASIC1.99□□□□□ -2.09
CHMP3Q9Y3E7 RNU7-40P-201ENST00000516397 64 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 192.5 ms