Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR4500-201ENST00000579472 76 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 MIR4752-201ENST00000579672 72 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 AP001362.1-201ENST00000625165 124 ntBASIC0□□□□□ -2.41
VPS28Q9UK41 MIR610-201ENST00000385139 96 ntBASIC-0.01□□□□□ -2.41
VPS28Q9UK41 RNU6-127P-201ENST00000390897 107 ntBASIC-0.01□□□□□ -2.41
VPS28Q9UK41 RNU7-104P-201ENST00000459398 79 ntBASIC-0.01□□□□□ -2.41
VPS28Q9UK41 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.01□□□□□ -2.41
VPS28Q9UK41 RNU7-161P-201ENST00000517289 62 ntBASIC-0.01□□□□□ -2.41
VPS28Q9UK41 MT-TG-201ENST00000387429 68 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 RNU6-138P-201ENST00000515952 107 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 RNU7-2P-201ENST00000516096 62 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 MIR2909-201ENST00000617113 69 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 AL109933.3-201ENST00000619095 188 ntBASIC-0.02□□□□□ -2.41
VPS28Q9UK41 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 RNA5SP403-201ENST00000363598 108 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 RNA5SP457-201ENST00000363657 124 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 RNA5SP325-201ENST00000363756 130 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 RNU4-11P-201ENST00000365287 132 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 AC097635.1-201ENST00000450678 155 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 RPL39P34-201ENST00000477141 156 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 MIR5190-201ENST00000581537 80 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 AL162376.1-201ENST00000624117 175 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 AC067863.3-201ENST00000624172 122 ntBASIC-0.03□□□□□ -2.41
VPS28Q9UK41 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 Y_RNA.85-201ENST00000363014 111 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 RNU6-682P-201ENST00000363843 106 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 RNU6-865P-201ENST00000364772 107 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 RNU6-449P-201ENST00000383914 107 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 RNU6-388P-201ENST00000517012 105 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 RNU6-389P-201ENST00000517048 105 ntBASIC-0.04□□□□□ -2.42
VPS28Q9UK41 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 MIR599-201ENST00000385069 95 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 MIR548I2-201ENST00000408348 149 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 AC108059.2-201ENST00000434626 151 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 TRAJ51-201ENST00000504127 63 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 AC108081.1-201ENST00000604358 221 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 RNU1-29P-201ENST00000606574 126 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 MIR371B-201ENST00000638082 66 ntBASIC-0.05□□□□□ -2.42
VPS28Q9UK41 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.06□□□□□ -2.42
VPS28Q9UK41 RNU6-616P-201ENST00000384353 107 ntBASIC-0.06□□□□□ -2.42
VPS28Q9UK41 MIR643-201ENST00000385267 97 ntBASIC-0.06□□□□□ -2.42
VPS28Q9UK41 SNORD114-5-201ENST00000362928 70 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 SNORD115-35-201ENST00000365122 82 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 SNORD41.1-201ENST00000391000 69 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 BX276092.1-201ENST00000427368 251 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 MIR5706-201ENST00000579841 80 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 MIR4290-201ENST00000583807 95 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 U7.6-201ENST00000610841 64 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 MIR499B-201ENST00000636498 73 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 AC073869.9-201ENST00000641610 120 ntBASIC-0.07□□□□□ -2.42
VPS28Q9UK41 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.08□□□□□ -2.42
VPS28Q9UK41 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.08□□□□□ -2.42
VPS28Q9UK41 MIR892B-201ENST00000401279 77 ntBASIC-0.08□□□□□ -2.42
VPS28Q9UK41 SNORA81.3-201ENST00000517283 198 ntBASIC-0.08□□□□□ -2.42
VPS28Q9UK41 MIR4743-201ENST00000584576 69 ntBASIC-0.08□□□□□ -2.42
VPS28Q9UK41 RNU6-151P-201ENST00000364158 107 ntBASIC-0.09□□□□□ -2.42
VPS28Q9UK41 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.09□□□□□ -2.42
VPS28Q9UK41 RNU6-782P-201ENST00000516852 104 ntBASIC-0.09□□□□□ -2.42
VPS28Q9UK41 AC141557.1-201ENST00000540982 400 ntBASIC-0.09□□□□□ -2.42
VPS28Q9UK41 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.09□□□□□ -2.42
VPS28Q9UK41 MIR519A1-201ENST00000385257 85 ntBASIC-0.1□□□□□ -2.43
VPS28Q9UK41 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
VPS28Q9UK41 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.1□□□□□ -2.43
VPS28Q9UK41 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.1□□□□□ -2.43
VPS28Q9UK41 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.1□□□□□ -2.43
VPS28Q9UK41 MIR376B-201ENST00000614515 100 ntBASIC-0.1□□□□□ -2.43
VPS28Q9UK41 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.1□□□□□ -2.43
VPS28Q9UK41 RNU6-170P-201ENST00000362832 104 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 RNU6-915P-201ENST00000364943 103 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 RNU6-652P-201ENST00000365488 107 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 MIR145-201ENST00000384967 88 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 MIR513C-201ENST00000401352 84 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 RNU7-197P-201ENST00000458836 62 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 SNORA70.25-201ENST00000612741 95 ntBASIC-0.11□□□□□ -2.43
VPS28Q9UK41 MIR593-201ENST00000384856 100 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 MIR501-201ENST00000390204 84 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 RNU6-460P-201ENST00000391158 108 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 RNU7-6P-201ENST00000516845 62 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 MIR3121-201ENST00000579680 77 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 MIR3163-201ENST00000581592 73 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 AC004792.1-201ENST00000614523 137 ntBASIC-0.12□□□□□ -2.43
VPS28Q9UK41 RNU6-571P-201ENST00000384128 107 ntBASIC-0.13□□□□□ -2.43
VPS28Q9UK41 RNU6-269P-201ENST00000391077 97 ntBASIC-0.13□□□□□ -2.43
VPS28Q9UK41 SNORD63B-201ENST00000411005 70 ntBASIC-0.13□□□□□ -2.43
VPS28Q9UK41 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.13□□□□□ -2.43
VPS28Q9UK41 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.14□□□□□ -2.43
VPS28Q9UK41 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.14□□□□□ -2.43
VPS28Q9UK41 AC074198.2-201ENST00000508153 258 ntBASIC-0.14□□□□□ -2.43
VPS28Q9UK41 MIR548AD-201ENST00000584780 82 ntBASIC-0.14□□□□□ -2.43
VPS28Q9UK41 SNORD115-19-201ENST00000363098 82 ntBASIC-0.15□□□□□ -2.43
VPS28Q9UK41 SNORD115-18-201ENST00000363293 82 ntBASIC-0.15□□□□□ -2.43
VPS28Q9UK41 SNORD115-17-201ENST00000364612 82 ntBASIC-0.15□□□□□ -2.43
VPS28Q9UK41 SNORD116-18-201ENST00000383961 92 ntBASIC-0.15□□□□□ -2.43
VPS28Q9UK41 RNU7-195P-201ENST00000458793 62 ntBASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms