Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 SERF1AP1-201ENST00000514575 187 ntBASIC-1.84□□□□□ -2.7
USE1Q9NZ43 RNU6-850P-201ENST00000516934 103 ntBASIC-1.84□□□□□ -2.7
USE1Q9NZ43 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 RNU6-978P-201ENST00000364371 103 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 RNU6-690P-201ENST00000365242 106 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 SNORD116-29-201ENST00000384516 83 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 RNU4-69P-201ENST00000410677 143 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 AC009779.6-201ENST00000603972 165 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 RNU2-4P-201ENST00000606190 192 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.85□□□□□ -2.71
USE1Q9NZ43 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 Y_RNA.541-201ENST00000384640 113 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 RNU6-476P-201ENST00000384726 107 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 MIR548F1-201ENST00000408667 84 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 RNU6-706P-201ENST00000517229 104 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-1.86□□□□□ -2.71
USE1Q9NZ43 UBE2WP1-201ENST00000362030 340 ntBASIC-1.87□□□□□ -2.71
USE1Q9NZ43 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.87□□□□□ -2.71
USE1Q9NZ43 RNU4-43P-201ENST00000410628 137 ntBASIC-1.87□□□□□ -2.71
USE1Q9NZ43 AL353813.1-201ENST00000440700 253 ntBASIC-1.87□□□□□ -2.71
USE1Q9NZ43 RNU7-2P-201ENST00000516096 62 ntBASIC-1.87□□□□□ -2.71
USE1Q9NZ43 MIR376B-201ENST00000614515 100 ntBASIC-1.87□□□□□ -2.71
USE1Q9NZ43 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.88□□□□□ -2.71
USE1Q9NZ43 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.88□□□□□ -2.71
USE1Q9NZ43 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.88□□□□□ -2.71
USE1Q9NZ43 RNU6-905P-201ENST00000384434 107 ntBASIC-1.88□□□□□ -2.71
USE1Q9NZ43 TRDV1-202ENST00000621643 102 ntBASIC-1.88□□□□□ -2.71
USE1Q9NZ43 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 RNU6-472P-201ENST00000384299 107 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 Y_RNA.516-201ENST00000384541 124 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 SNORD77B-201ENST00000391112 67 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 MIR1468-201ENST00000410600 86 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 SNORD18.2-201ENST00000459604 70 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 AC084782.3-201ENST00000612282 578 ntBASIC-1.89□□□□□ -2.71
USE1Q9NZ43 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 Y_RNA.279-201ENST00000364763 95 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.9□□□□□ -2.71
USE1Q9NZ43 Y_RNA.718-201ENST00000517110 102 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 AC084781.2-201ENST00000615568 161 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 AC087741.2-201ENST00000619415 172 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 U6.100-201ENST00000636230 99 ntBASIC-1.9□□□□□ -2.71
USE1Q9NZ43 Y_RNA.3-201ENST00000362331 103 ntBASIC-1.91□□□□□ -2.72
USE1Q9NZ43 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.91□□□□□ -2.72
USE1Q9NZ43 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.91□□□□□ -2.72
USE1Q9NZ43 AL161932.1-201ENST00000437408 146 ntBASIC-1.91□□□□□ -2.72
USE1Q9NZ43 AL442663.2-201ENST00000554385 511 ntBASIC-1.91□□□□□ -2.72
USE1Q9NZ43 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.92□□□□□ -2.72
USE1Q9NZ43 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.92□□□□□ -2.72
USE1Q9NZ43 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 RNU6-121P-201ENST00000410525 99 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 RNU6-720P-201ENST00000516363 108 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 AC138207.3-201ENST00000585289 166 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 AC092794.1-201ENST00000612734 582 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 AC090574.1-201ENST00000623186 233 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 AC132825.6-201ENST00000638861 357 ntBASIC-1.93□□□□□ -2.72
USE1Q9NZ43 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.94□□□□□ -2.72
USE1Q9NZ43 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.94□□□□□ -2.72
USE1Q9NZ43 MIR582-201ENST00000365731 98 ntBASIC-1.94□□□□□ -2.72
USE1Q9NZ43 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.94□□□□□ -2.72
USE1Q9NZ43 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.94□□□□□ -2.72
USE1Q9NZ43 RNA5SP461-201ENST00000516451 104 ntBASIC-1.94□□□□□ -2.72
USE1Q9NZ43 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 SNORD114-17-201ENST00000364699 75 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 RNU6-381P-201ENST00000391259 108 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 AC097510.1-201ENST00000510945 133 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 AC021443.1-201ENST00000604478 211 ntBASIC-1.95□□□□□ -2.72
USE1Q9NZ43 Y_RNA.28-201ENST00000362554 111 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 SNORD27-201ENST00000363981 72 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 SNORA63.7-201ENST00000365579 123 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 SNORD116-6-201ENST00000384711 96 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 MIR1302-11-201ENST00000408051 138 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 MIR1302-9-201ENST00000408365 138 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 MIR1302-10-201ENST00000408734 138 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 AL121914.1-201ENST00000450188 156 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 RNU7-164P-201ENST00000459221 62 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 MIR1302-2-201ENST00000607096 138 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 snoR1.1-201ENST00000628177 80 ntBASIC-1.96□□□□□ -2.72
USE1Q9NZ43 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 RNU4-24P-201ENST00000364565 139 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 MIR216B-201ENST00000390186 82 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 MIR548E-201ENST00000408287 88 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 MIR548O2-201ENST00000616090 70 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.97□□□□□ -2.72
USE1Q9NZ43 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.98□□□□□ -2.73
USE1Q9NZ43 RNU6-588P-201ENST00000410281 105 ntBASIC-1.98□□□□□ -2.73
USE1Q9NZ43 RNU7-123P-201ENST00000515911 60 ntBASIC-1.98□□□□□ -2.73
USE1Q9NZ43 RNU6-240P-201ENST00000516098 97 ntBASIC-1.98□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 190.1 ms