Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.07□□□□□ -2.58
SCN3AQ9NY46 RNU6-718P-201ENST00000516166 105 ntBASIC-1.07□□□□□ -2.58
SCN3AQ9NY46 AC084782.3-201ENST00000612282 578 ntBASIC-1.07□□□□□ -2.58
SCN3AQ9NY46 MIR376B-201ENST00000614515 100 ntBASIC-1.07□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.28-201ENST00000362554 111 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 MIR1207-201ENST00000408249 87 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 MIR2113-201ENST00000459007 91 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 AC022137.1-201ENST00000483735 151 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 RNU6-664P-201ENST00000362381 107 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 SNORD36A-201ENST00000362874 73 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 AC140658.3-201ENST00000567603 271 ntBASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.08□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 RNU6-103P-201ENST00000363686 107 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 RNU6-102P-201ENST00000384485 104 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 MIR517B-201ENST00000385102 67 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 RNU4-43P-201ENST00000410628 137 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 SNORA20.3-201ENST00000516880 132 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 MIR4460-201ENST00000577862 86 ntBASIC-1.09□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.57-201ENST00000362806 113 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 SNORD115-35-201ENST00000365122 82 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.516-201ENST00000384541 124 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 MIR548AE2-201ENST00000583456 67 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 RPS29P30-201ENST00000600975 111 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 MIR8068-201ENST00000618032 68 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 AC022079.1-201ENST00000621546 602 ntBASIC-1.1□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 RNU7-123P-201ENST00000515911 60 ntBASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.1□□□□□ -2.59
SCN3AQ9NY46 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 SNORD27-201ENST00000363981 72 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 MIR4441-201ENST00000582623 100 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 SNORD38.2-201ENST00000384470 69 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 RNU6-243P-201ENST00000391140 107 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 SNORD2.1-201ENST00000458762 69 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.11□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.12□□□□□ -2.59
SCN3AQ9NY46 RNU6-662P-201ENST00000384253 104 ntBASIC-1.12□□□□□ -2.59
SCN3AQ9NY46 RNU6-472P-201ENST00000384299 107 ntBASIC-1.12□□□□□ -2.59
SCN3AQ9NY46 RNU7-2P-201ENST00000516096 62 ntBASIC-1.12□□□□□ -2.59
SCN3AQ9NY46 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.12□□□□□ -2.59
SCN3AQ9NY46 AP001362.1-201ENST00000625165 124 ntBASIC-1.12□□□□□ -2.59
SCN3AQ9NY46 PART1_1.1-201ENST00000611761 217 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 AC093783.1-201ENST00000612976 329 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 uc_338.19-201ENST00000616808 99 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 AP000770.2-201ENST00000623694 100 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 SNORA25.1-201ENST00000362326 128 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 RNU4-69P-201ENST00000410677 143 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 RNU6-287P-201ENST00000516230 98 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 U4.1-201ENST00000620349 87 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 MTND4LP32-201ENST00000636111 270 ntBASIC-1.13□□□□□ -2.59
SCN3AQ9NY46 SNORD74.6-201ENST00000364796 70 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 SNORA32-201ENST00000384072 121 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 RNU6-524P-201ENST00000384270 107 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 SNORD64-201ENST00000386683 67 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 RNU6-561P-201ENST00000516222 102 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.14□□□□□ -2.59
SCN3AQ9NY46 RNU6-235P-201ENST00000362644 107 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 MIR548E-201ENST00000408287 88 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 SNORD116-25-201ENST00000516517 92 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 RNU6-850P-201ENST00000516934 103 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 U4.2-201ENST00000618561 85 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 AC073869.6-201ENST00000640656 341 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 SNORD116-2-201ENST00000384274 95 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 RNU6-274P-201ENST00000459566 107 ntBASIC-1.15□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.16□□□□□ -2.59
SCN3AQ9NY46 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.16□□□□□ -2.59
SCN3AQ9NY46 AC107027.2-201ENST00000512197 115 ntBASIC-1.16□□□□□ -2.59
SCN3AQ9NY46 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.16□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.16□□□□□ -2.6
SCN3AQ9NY46 MIR652-201ENST00000385278 98 ntBASIC-1.16□□□□□ -2.6
SCN3AQ9NY46 FGF7P6-202ENST00000451282 293 ntBASIC-1.16□□□□□ -2.6
SCN3AQ9NY46 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.16□□□□□ -2.6
SCN3AQ9NY46 snoR1.1-201ENST00000628177 80 ntBASIC-1.16□□□□□ -2.6
SCN3AQ9NY46 RNU6-957P-201ENST00000363652 99 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms