Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 RNU4-32P-201ENST00000363404 141 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 RNA5SP363-201ENST00000365072 115 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 MIR588-201ENST00000384900 83 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 MIR513A1-201ENST00000385138 129 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 snoU13.9-201ENST00000458927 103 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 RNU6-850P-201ENST00000516934 103 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 SNORA44.1-201ENST00000517031 108 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 SNORA31.24-201ENST00000517232 57 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 AC133485.1-201ENST00000567176 124 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 U6.109-201ENST00000636749 87 ntBASIC1.81□□□□□ -2.12
USP40Q9NVE5 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
USP40Q9NVE5 Y_RNA.57-201ENST00000362806 113 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 Y_RNA.168-201ENST00000363740 102 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 BX276092.1-201ENST00000427368 251 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 HSPE1P24-201ENST00000450782 238 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 RNU6-922P-201ENST00000516753 99 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 RNU1-92P-201ENST00000517017 135 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 AC145423.2-201ENST00000610631 239 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 ZNF209P-201ENST00000593450 2304 ntBASIC1.8□□□□□ -2.12
USP40Q9NVE5 RNU6-624P-201ENST00000363411 107 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 SNORA7.1-201ENST00000363750 139 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 Y_RNA.327-201ENST00000365201 102 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 snoU13.11-201ENST00000459219 104 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.79□□□□□ -2.12
USP40Q9NVE5 MIR4500-201ENST00000579472 76 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 MIR4285-201ENST00000581001 85 ntBASIC1.79□□□□□ -2.12
USP40Q9NVE5 RNU6-315P-201ENST00000362666 107 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 MIR518E-201ENST00000385252 88 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 RNA5SP292-201ENST00000390974 118 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 RNU6-129P-201ENST00000391022 107 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 MIR1304-201ENST00000408243 91 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 AL354695.1-201ENST00000427935 228 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 AC008834.1-201ENST00000511612 175 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 MIR8066-201ENST00000617280 78 ntBASIC1.78□□□□□ -2.12
USP40Q9NVE5 Y_RNA.119-201ENST00000363301 96 ntBASIC1.77□□□□□ -2.13
USP40Q9NVE5 RNA5SP48-201ENST00000363969 126 ntBASIC1.77□□□□□ -2.13
USP40Q9NVE5 Y_RNA.532-201ENST00000384590 113 ntBASIC1.77□□□□□ -2.13
USP40Q9NVE5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.77□□□□□ -2.13
USP40Q9NVE5 AC245517.4-201ENST00000448601 281 ntBASIC1.77□□□□□ -2.13
USP40Q9NVE5 MIR4421-201ENST00000578133 69 ntBASIC1.77□□□□□ -2.13
USP40Q9NVE5 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
USP40Q9NVE5 RNU6-205P-201ENST00000390858 107 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 MIR1236-201ENST00000408340 102 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 SCARNA18B-201ENST00000458806 135 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 Y_RNA.648-201ENST00000459455 110 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 RNU6-75P-201ENST00000515944 104 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 AC019176.1-201ENST00000518519 225 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 AP003716.2-201ENST00000528260 108 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 AP000753.3-201ENST00000604083 169 ntBASIC1.76□□□□□ -2.13
USP40Q9NVE5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.75□□□□□ -2.13
USP40Q9NVE5 SNORD36A-201ENST00000362874 73 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 SNORD115-37-201ENST00000363768 82 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 RNU6-132P-201ENST00000383863 107 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 AC023790.1-201ENST00000482174 347 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 RNU6-322P-201ENST00000516010 103 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 AC015688.6-201ENST00000577737 104 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 MIR3198-2-201ENST00000577868 80 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 AC008163.1-202ENST00000636004 2889 ntBASIC1.75□□□□□ -2.13
USP40Q9NVE5 RNU6-654P-201ENST00000364373 107 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 RNU6-392P-201ENST00000364926 101 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 RNU6-571P-201ENST00000384128 107 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 MIR516A2-201ENST00000384888 90 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 MIR516A1-201ENST00000385033 90 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 SNORD90-201ENST00000391145 111 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 RNU6-1165P-201ENST00000410119 107 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 RNA5SP95-201ENST00000410319 137 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 RNU7-106P-201ENST00000459514 67 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 MIR4796-201ENST00000580742 81 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 SNORA4-201ENST00000584302 138 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 MIR6516-201ENST00000630554 81 ntBASIC1.74□□□□□ -2.13
USP40Q9NVE5 MIRLET7A1-201ENST00000362295 80 ntBASIC1.73□□□□□ -2.13
USP40Q9NVE5 RNU6-788P-201ENST00000390967 104 ntBASIC1.73□□□□□ -2.13
USP40Q9NVE5 MIR934-201ENST00000401241 83 ntBASIC1.73□□□□□ -2.13
USP40Q9NVE5 MIR1185-1-201ENST00000408598 86 ntBASIC1.73□□□□□ -2.13
USP40Q9NVE5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USP40Q9NVE5 SNORA63.2-201ENST00000362603 126 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 SNORD1A-201ENST00000364968 72 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 Y_RNA.588-201ENST00000391254 102 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 AC079140.2-201ENST00000506193 142 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 SNORA25.16-201ENST00000516741 121 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 MIR3134-201ENST00000579433 74 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 U7.4-201ENST00000614961 63 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 AL157834.3-201ENST00000615543 103 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 AL161722.3-201ENST00000605789 2983 ntBASIC1.72□□□□□ -2.13
USP40Q9NVE5 MIR520H-201ENST00000385126 88 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 MIR1276-201ENST00000408707 83 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 RNU7-62P-201ENST00000458856 62 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 RNU6-531P-201ENST00000516694 104 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 RNU6-557P-201ENST00000516842 110 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 MIR3937-201ENST00000580135 106 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 MIR4264-201ENST00000583520 66 ntBASIC1.71□□□□□ -2.14
USP40Q9NVE5 RNU6-161P-201ENST00000363051 106 ntBASIC1.7□□□□□ -2.14
USP40Q9NVE5 Y_RNA.224-201ENST00000364308 111 ntBASIC1.7□□□□□ -2.14
USP40Q9NVE5 Y_RNA.283-201ENST00000364798 112 ntBASIC1.7□□□□□ -2.14
USP40Q9NVE5 RNU6-1108P-201ENST00000516308 104 ntBASIC1.7□□□□□ -2.14
USP40Q9NVE5 MIR3064-201ENST00000581130 66 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms