Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU1-119P-201ENST00000391122 165 ntBASIC1.09□□□□□ -2.23
TDP1Q9NUW8 RPS29P1-201ENST00000465274 159 ntBASIC1.09□□□□□ -2.23
TDP1Q9NUW8 RNU6-531P-201ENST00000516694 104 ntBASIC1.09□□□□□ -2.23
TDP1Q9NUW8 MIR6734-201ENST00000621166 68 ntBASIC1.09□□□□□ -2.23
TDP1Q9NUW8 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
TDP1Q9NUW8 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
TDP1Q9NUW8 RNU6-1201P-201ENST00000384227 107 ntBASIC1.08□□□□□ -2.24
TDP1Q9NUW8 AL035461.1-201ENST00000421490 332 ntBASIC1.08□□□□□ -2.24
TDP1Q9NUW8 RNU6-765P-201ENST00000516916 99 ntBASIC1.08□□□□□ -2.24
TDP1Q9NUW8 SNORD114-21-201ENST00000606412 72 ntBASIC1.08□□□□□ -2.24
TDP1Q9NUW8 RNU4-58P-201ENST00000363192 141 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 MIR520H-201ENST00000385126 88 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 MIR577-201ENST00000385196 96 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 MIR1285-1-201ENST00000408593 84 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 OR2A41P-201ENST00000473586 105 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 RNU6-1006P-201ENST00000516998 103 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 MIR4694-201ENST00000578534 80 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 AC090897.1-201ENST00000580909 226 ntBASIC1.07□□□□□ -2.24
TDP1Q9NUW8 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.07□□□□□ -2.24
TDP1Q9NUW8 Y_RNA.163-201ENST00000363702 113 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 RNU6-106P-201ENST00000384405 107 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 RNU6-554P-201ENST00000410466 106 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 MIR4500-201ENST00000579472 76 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 AC025627.3-201ENST00000582078 182 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 uc_338.28-201ENST00000612082 187 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 AL442128.1-201ENST00000615151 90 ntBASIC1.06□□□□□ -2.24
TDP1Q9NUW8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
TDP1Q9NUW8 RNY3P2-201ENST00000362918 102 ntBASIC1.05□□□□□ -2.24
TDP1Q9NUW8 Y_RNA.247-201ENST00000364500 92 ntBASIC1.05□□□□□ -2.24
TDP1Q9NUW8 Y_RNA.377-201ENST00000365644 108 ntBASIC1.05□□□□□ -2.24
TDP1Q9NUW8 RNU6-44P-201ENST00000384045 107 ntBASIC1.05□□□□□ -2.24
TDP1Q9NUW8 AC013244.2-201ENST00000603396 103 ntBASIC1.05□□□□□ -2.24
TDP1Q9NUW8 MIR6788-201ENST00000618842 66 ntBASIC1.05□□□□□ -2.24
TDP1Q9NUW8 RNU6-832P-201ENST00000363319 107 ntBASIC1.04□□□□□ -2.24
TDP1Q9NUW8 RNU6-1099P-201ENST00000363533 107 ntBASIC1.04□□□□□ -2.24
TDP1Q9NUW8 RNU4-38P-201ENST00000364472 129 ntBASIC1.04□□□□□ -2.24
TDP1Q9NUW8 RNU6-1194P-201ENST00000516208 104 ntBASIC1.04□□□□□ -2.24
TDP1Q9NUW8 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.04□□□□□ -2.24
TDP1Q9NUW8 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.04□□□□□ -2.24
TDP1Q9NUW8 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
TDP1Q9NUW8 HSBP1P2-201ENST00000299671 229 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 SNORA63.4-201ENST00000362763 126 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 SNORD38.1-201ENST00000363863 68 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 RNU6-755P-201ENST00000364400 103 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 SNORD38.2-201ENST00000384470 69 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 MIR1302-5-201ENST00000408164 150 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 MIR548J-201ENST00000408833 112 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 MIR4661-201ENST00000582720 75 ntBASIC1.03□□□□□ -2.24
TDP1Q9NUW8 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.03□□□□□ -2.24
TDP1Q9NUW8 MIR373-201ENST00000362273 69 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 RNU6-448P-201ENST00000517052 107 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 RNU6-1223P-201ENST00000517124 104 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 AP003327.1-201ENST00000529684 127 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 AC141557.1-201ENST00000540982 400 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 MIR3613-201ENST00000579844 87 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 MIR151B-201ENST00000584249 96 ntBASIC1.02□□□□□ -2.25
TDP1Q9NUW8 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 SNORD99-201ENST00000408612 74 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 SNORA19.1-201ENST00000410656 129 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 BX276092.1-201ENST00000427368 251 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 Y_RNA.697-201ENST00000516776 113 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 MIR6857-201ENST00000613267 93 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 AC022709.1-201ENST00000615967 87 ntBASIC1.01□□□□□ -2.25
TDP1Q9NUW8 MIR101-2-201ENST00000362195 79 ntBASIC1□□□□□ -2.25
TDP1Q9NUW8 MIR573-201ENST00000384964 99 ntBASIC1□□□□□ -2.25
TDP1Q9NUW8 MTND5P40-201ENST00000559945 246 ntBASIC1□□□□□ -2.25
TDP1Q9NUW8 AC096720.1-201ENST00000604441 183 ntBASIC1□□□□□ -2.25
TDP1Q9NUW8 AC211469.2-201ENST00000605461 205 ntBASIC1□□□□□ -2.25
TDP1Q9NUW8 Y_RNA.78-201ENST00000362970 110 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 RNU4-36P-201ENST00000364294 144 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 Y_RNA.536-201ENST00000384621 113 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 RNU6-291P-201ENST00000384720 107 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 MIR548G-201ENST00000408442 89 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 SNORD100-201ENST00000408573 76 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 SPINT5P-201ENST00000448174 155 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 SNRPGP12-201ENST00000449481 213 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.99□□□□□ -2.25
TDP1Q9NUW8 RNU6-904P-201ENST00000516206 101 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 AL353765.1-201ENST00000605514 183 ntBASIC0.99□□□□□ -2.25
TDP1Q9NUW8 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
TDP1Q9NUW8 SNORA51.5-201ENST00000384126 131 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 RNU6-535P-201ENST00000384722 107 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 AL031737.1-201ENST00000450125 223 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 AC002350.1-201ENST00000490759 375 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 Y_RNA.659-201ENST00000515994 113 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 MIR3973-201ENST00000579824 107 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 RNU6-90P-201ENST00000606352 106 ntBASIC0.98□□□□□ -2.25
TDP1Q9NUW8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
TDP1Q9NUW8 Y_RNA.10-201ENST00000362371 110 ntBASIC0.97□□□□□ -2.25
TDP1Q9NUW8 Y_RNA.56-201ENST00000362798 112 ntBASIC0.97□□□□□ -2.25
TDP1Q9NUW8 RNU6-756P-201ENST00000383997 107 ntBASIC0.97□□□□□ -2.25
TDP1Q9NUW8 RNU6-571P-201ENST00000384128 107 ntBASIC0.97□□□□□ -2.25
TDP1Q9NUW8 AC244098.3-201ENST00000424803 96 ntBASIC0.97□□□□□ -2.25
TDP1Q9NUW8 AC011195.1-201ENST00000578177 177 ntBASIC0.97□□□□□ -2.25
TDP1Q9NUW8 MIR450A1-201ENST00000362262 91 ntBASIC0.96□□□□□ -2.26
TDP1Q9NUW8 RNU6-1113P-201ENST00000384348 107 ntBASIC0.96□□□□□ -2.26
TDP1Q9NUW8 MIR590-201ENST00000385008 97 ntBASIC0.96□□□□□ -2.26
TDP1Q9NUW8 Y_RNA.601-201ENST00000410500 113 ntBASIC0.96□□□□□ -2.26
TDP1Q9NUW8 RNU6-850P-201ENST00000516934 103 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 185.5 ms