Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 SUMO1P3-201ENST00000439961 304 ntBASIC0.54□□□□□ -2.32
HINT3Q9NQE9 RNU4-54P-201ENST00000516428 129 ntBASIC0.54□□□□□ -2.32
HINT3Q9NQE9 RNU6-659P-201ENST00000516454 104 ntBASIC0.54□□□□□ -2.32
HINT3Q9NQE9 MIR3914-2-201ENST00000637339 95 ntBASIC0.54□□□□□ -2.32
HINT3Q9NQE9 SNORA63.5-201ENST00000363548 123 ntBASIC0.53□□□□□ -2.32
HINT3Q9NQE9 RNA5SP245-201ENST00000364239 121 ntBASIC0.53□□□□□ -2.32
HINT3Q9NQE9 RNA5SP121-201ENST00000516537 101 ntBASIC0.53□□□□□ -2.32
HINT3Q9NQE9 RNU6-135P-201ENST00000516769 101 ntBASIC0.53□□□□□ -2.32
HINT3Q9NQE9 MIR548H5-201ENST00000580314 60 ntBASIC0.53□□□□□ -2.32
HINT3Q9NQE9 AC092634.7-201ENST00000621022 103 ntBASIC0.53□□□□□ -2.32
HINT3Q9NQE9 SNORD18A-201ENST00000363753 72 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 RNU4-67P-201ENST00000364569 141 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.360-201ENST00000365512 102 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 SNORD116-14-201ENST00000383894 92 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 SNORD116-17-201ENST00000383929 92 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 SNORD116-15-201ENST00000384445 92 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 SNORD116-19-201ENST00000384729 92 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.567-201ENST00000384736 106 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 MIR34C-201ENST00000384831 77 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 TMSB4XP3-201ENST00000445144 114 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.52□□□□□ -2.33
HINT3Q9NQE9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
HINT3Q9NQE9 RNU6-363P-201ENST00000362895 105 ntBASIC0.51□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.118-201ENST00000363300 101 ntBASIC0.51□□□□□ -2.33
HINT3Q9NQE9 RNA5SP517-201ENST00000364724 117 ntBASIC0.51□□□□□ -2.33
HINT3Q9NQE9 SNORA7.5-201ENST00000410672 110 ntBASIC0.51□□□□□ -2.33
HINT3Q9NQE9 RN7SKP12-201ENST00000516275 143 ntBASIC0.51□□□□□ -2.33
HINT3Q9NQE9 MIR6515-201ENST00000619843 57 ntBASIC0.51□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.362-201ENST00000365518 110 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 RNU6-81P-201ENST00000365608 104 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 RNU6-959P-201ENST00000384671 107 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 BX276092.1-201ENST00000427368 251 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 AC092628.1-201ENST00000436250 252 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.649-201ENST00000459077 103 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 RNU7-10P-201ENST00000607194 63 ntBASIC0.5□□□□□ -2.33
HINT3Q9NQE9 RNA5SP347-201ENST00000362445 119 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 SNORA36.1-201ENST00000363424 132 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 RNU6-1229P-201ENST00000364295 107 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.507-201ENST00000384500 99 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 SNORD33.1-201ENST00000516213 88 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 AC138869.1-201ENST00000568623 124 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 MIR4639-201ENST00000584938 69 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 U6.95-201ENST00000636931 70 ntBASIC0.49□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.155-201ENST00000363632 101 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 RNU6-409P-201ENST00000384114 104 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 SNORA8.2-201ENST00000384372 139 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 SNORD28-201ENST00000384706 75 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 MIR635-201ENST00000384830 98 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 MIR548I2-201ENST00000408348 149 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 AC244505.6-201ENST00000452829 130 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 AL157398.1-201ENST00000452981 186 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 RNU6-1333P-201ENST00000516162 93 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 RNA5SP47-201ENST00000517230 109 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.48□□□□□ -2.33
HINT3Q9NQE9 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 MIR6513-201ENST00000621188 64 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 AL162726.3-218ENST00000636401 95 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 AL512310.12-203ENST00000640543 90 ntBASIC0.48□□□□□ -2.33
HINT3Q9NQE9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.48□□□□□ -2.33
HINT3Q9NQE9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
HINT3Q9NQE9 RNU6-1313P-201ENST00000362622 102 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 Y_RNA.85-201ENST00000363014 111 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 SNORD38.2-201ENST00000384470 69 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 RNU6-816P-201ENST00000390914 107 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 RNU6-1268P-201ENST00000391214 107 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 RNU6-1239P-201ENST00000391310 107 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 AL603908.1-201ENST00000406098 201 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 SNORA40.8-201ENST00000411034 126 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 AL353813.1-201ENST00000440700 253 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 RPL39P34-201ENST00000477141 156 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 TRAJ51-201ENST00000504127 63 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 SCARNA16.5-201ENST00000517114 183 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 AC007012.1-201ENST00000567192 175 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 MIR4679-2-201ENST00000578358 77 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.47□□□□□ -2.33
HINT3Q9NQE9 RNU6-571P-201ENST00000384128 107 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 MIR598-201ENST00000384868 97 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 MIR518A1-201ENST00000385068 85 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 MIR548A3-201ENST00000385297 97 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 MIR1912-201ENST00000410389 80 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 SNORD71-201ENST00000411292 86 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 SNRPGP12-201ENST00000449481 213 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 RNU6-1018P-201ENST00000516577 106 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 RNU6-229P-201ENST00000516614 102 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 RNA5SP268-201ENST00000516828 124 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.46□□□□□ -2.34
HINT3Q9NQE9 SNORA25.18-201ENST00000607153 114 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 AC244669.1-204ENST00000621564 178 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 AL035470.1-201ENST00000622571 220 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 MIR6828-201ENST00000636181 60 ntBASIC0.46□□□□□ -2.34
HINT3Q9NQE9 Y_RNA.49-201ENST00000362714 112 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 SNORD118-201ENST00000363593 134 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 MIR489-201ENST00000384923 84 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 MIR548A1-201ENST00000385041 97 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.45□□□□□ -2.34
HINT3Q9NQE9 SNORA68.3-201ENST00000515906 83 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 RNA5SP436-201ENST00000516020 115 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 RNU6-1006P-201ENST00000516998 103 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 AL670379.3-201ENST00000605040 251 ntBASIC0.45□□□□□ -2.34
HINT3Q9NQE9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms