Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MIR4694-201ENST00000578534 80 ntBASIC1.38□□□□□ -2.19
TRAIPQ9BWF2 MIR548H5-201ENST00000580314 60 ntBASIC1.38□□□□□ -2.19
TRAIPQ9BWF2 AL442128.1-201ENST00000615151 90 ntBASIC1.38□□□□□ -2.19
TRAIPQ9BWF2 Y_RNA.10-201ENST00000362371 110 ntBASIC1.37□□□□□ -2.19
TRAIPQ9BWF2 RNU4-36P-201ENST00000364294 144 ntBASIC1.37□□□□□ -2.19
TRAIPQ9BWF2 RNU6-535P-201ENST00000384722 107 ntBASIC1.37□□□□□ -2.19
TRAIPQ9BWF2 SPINT5P-201ENST00000448174 155 ntBASIC1.37□□□□□ -2.19
TRAIPQ9BWF2 RNU6-469P-201ENST00000516253 101 ntBASIC1.37□□□□□ -2.19
TRAIPQ9BWF2 Y_RNA.709-201ENST00000516952 92 ntBASIC1.37□□□□□ -2.19
TRAIPQ9BWF2 Y_RNA.174-201ENST00000363781 105 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 Y_RNA.536-201ENST00000384621 113 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 MIR608-201ENST00000384820 100 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 RNU6-589P-201ENST00000516485 107 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 RNA5SP102-201ENST00000516865 106 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 AC141557.1-201ENST00000540982 400 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 RNU6-90P-201ENST00000606352 106 ntBASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
TRAIPQ9BWF2 Y_RNA.56-201ENST00000362798 112 ntBASIC1.34□□□□□ -2.19
TRAIPQ9BWF2 RNY3P2-201ENST00000362918 102 ntBASIC1.34□□□□□ -2.19
TRAIPQ9BWF2 RNU4-45P-201ENST00000365469 141 ntBASIC1.34□□□□□ -2.19
TRAIPQ9BWF2 RNU6-1201P-201ENST00000384227 107 ntBASIC1.34□□□□□ -2.19
TRAIPQ9BWF2 RNU6-1113P-201ENST00000384348 107 ntBASIC1.34□□□□□ -2.19
TRAIPQ9BWF2 ACA64.5-201ENST00000516207 127 ntBASIC1.34□□□□□ -2.19
TRAIPQ9BWF2 SNORA22-201ENST00000383907 134 ntBASIC1.33□□□□□ -2.2
TRAIPQ9BWF2 MIR635-201ENST00000384830 98 ntBASIC1.33□□□□□ -2.2
TRAIPQ9BWF2 SNORD100-201ENST00000408573 76 ntBASIC1.33□□□□□ -2.2
TRAIPQ9BWF2 AC002350.1-201ENST00000490759 375 ntBASIC1.33□□□□□ -2.2
TRAIPQ9BWF2 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.33□□□□□ -2.2
TRAIPQ9BWF2 AC211469.2-201ENST00000605461 205 ntBASIC1.33□□□□□ -2.2
TRAIPQ9BWF2 Y_RNA.377-201ENST00000365644 108 ntBASIC1.32□□□□□ -2.2
TRAIPQ9BWF2 RNU6-571P-201ENST00000384128 107 ntBASIC1.32□□□□□ -2.2
TRAIPQ9BWF2 RNA5SP222-201ENST00000411039 105 ntBASIC1.32□□□□□ -2.2
TRAIPQ9BWF2 RNU6-919P-201ENST00000516731 104 ntBASIC1.32□□□□□ -2.2
TRAIPQ9BWF2 MIR3612-201ENST00000579753 87 ntBASIC1.32□□□□□ -2.2
TRAIPQ9BWF2 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
TRAIPQ9BWF2 HSBP1P2-201ENST00000299671 229 ntBASIC1.31□□□□□ -2.2
TRAIPQ9BWF2 RNU6-832P-201ENST00000363319 107 ntBASIC1.31□□□□□ -2.2
TRAIPQ9BWF2 BX276092.1-201ENST00000427368 251 ntBASIC1.31□□□□□ -2.2
TRAIPQ9BWF2 Y_RNA.659-201ENST00000515994 113 ntBASIC1.31□□□□□ -2.2
TRAIPQ9BWF2 Y_RNA.163-201ENST00000363702 113 ntBASIC1.3□□□□□ -2.2
TRAIPQ9BWF2 SNORD20-201ENST00000384550 80 ntBASIC1.3□□□□□ -2.2
TRAIPQ9BWF2 MIR577-201ENST00000385196 96 ntBASIC1.3□□□□□ -2.2
TRAIPQ9BWF2 MIR548G-201ENST00000408442 89 ntBASIC1.3□□□□□ -2.2
TRAIPQ9BWF2 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.3□□□□□ -2.2
TRAIPQ9BWF2 RNU6-291P-201ENST00000384720 107 ntBASIC1.29□□□□□ -2.2
TRAIPQ9BWF2 AC244098.3-201ENST00000424803 96 ntBASIC1.29□□□□□ -2.2
TRAIPQ9BWF2 RNU6-135P-201ENST00000516769 101 ntBASIC1.29□□□□□ -2.2
TRAIPQ9BWF2 AC138907.6-201ENST00000568401 126 ntBASIC1.29□□□□□ -2.2
TRAIPQ9BWF2 AC138869.1-201ENST00000568623 124 ntBASIC1.29□□□□□ -2.2
TRAIPQ9BWF2 SNORD45B-201ENST00000364617 72 ntBASIC1.28□□□□□ -2.2
TRAIPQ9BWF2 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.28□□□□□ -2.2
TRAIPQ9BWF2 RNU6-1099P-201ENST00000363533 107 ntBASIC1.27□□□□□ -2.21
TRAIPQ9BWF2 RNU1-93P-201ENST00000364704 169 ntBASIC1.27□□□□□ -2.21
TRAIPQ9BWF2 MIR518E-201ENST00000385252 88 ntBASIC1.27□□□□□ -2.21
TRAIPQ9BWF2 AL353813.1-201ENST00000440700 253 ntBASIC1.27□□□□□ -2.21
TRAIPQ9BWF2 MIR96-201ENST00000362288 78 ntBASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.191-201ENST00000363972 113 ntBASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 RNU6-215P-201ENST00000365169 102 ntBASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 RNU6-110P-201ENST00000384508 104 ntBASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 PSMC1P5-201ENST00000512850 177 ntBASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 MIR4452-201ENST00000583004 71 ntBASIC1.26□□□□□ -2.21
TRAIPQ9BWF2 SNORA36.2-201ENST00000384004 127 ntBASIC1.25□□□□□ -2.21
TRAIPQ9BWF2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
TRAIPQ9BWF2 RNU6-170P-201ENST00000362832 104 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.78-201ENST00000362970 110 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 SNORD114-22-201ENST00000365423 72 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.355-201ENST00000365462 98 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 RNY4P18-201ENST00000391107 89 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.601-201ENST00000410500 113 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 RNU6-850P-201ENST00000516934 103 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 RNU6-1006P-201ENST00000516998 103 ntBASIC1.24□□□□□ -2.21
TRAIPQ9BWF2 RNU6-1229P-201ENST00000364295 107 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.342-201ENST00000365352 113 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 SNORA51.5-201ENST00000384126 131 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.508-201ENST00000384502 114 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 AL035461.1-201ENST00000421490 332 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 SNRPGP12-201ENST00000449481 213 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 AL031737.1-201ENST00000450125 223 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 SNORA31.14-201ENST00000516728 116 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 uc_338.16-201ENST00000621804 95 ntBASIC1.23□□□□□ -2.21
TRAIPQ9BWF2 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.22□□□□□ -2.21
TRAIPQ9BWF2 Y_RNA.567-201ENST00000384736 106 ntBASIC1.22□□□□□ -2.21
TRAIPQ9BWF2 MIR1285-1-201ENST00000408593 84 ntBASIC1.22□□□□□ -2.21
TRAIPQ9BWF2 AC092628.1-201ENST00000436250 252 ntBASIC1.22□□□□□ -2.21
TRAIPQ9BWF2 MIR4295-201ENST00000585286 85 ntBASIC1.22□□□□□ -2.21
TRAIPQ9BWF2 uc_338.28-201ENST00000612082 187 ntBASIC1.22□□□□□ -2.21
TRAIPQ9BWF2 MIR18A-201ENST00000362310 71 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 Y_RNA.32-201ENST00000362589 110 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 RNU6-1125P-201ENST00000363601 107 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 Y_RNA.224-201ENST00000364308 111 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 Y_RNA.247-201ENST00000364500 92 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 RNU6-480P-201ENST00000384332 107 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 AC087343.1-201ENST00000477341 475 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.21□□□□□ -2.22
TRAIPQ9BWF2 MIR6767-201ENST00000637302 66 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 218 ms