Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 RN7SKP88-201ENST00000516847 250 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 7SK.8-201ENST00000612110 250 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 7SK.11-201ENST00000615477 250 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 7SK.13-201ENST00000622040 250 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORD113.3-201ENST00000364630 78 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-652P-201ENST00000365488 107 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU7-185P-201ENST00000459215 60 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 AC048334.1-201ENST00000477975 159 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR4303-201ENST00000581299 66 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 AC023934.1-201ENST00000574529 2389 ntBASIC1.89□□□□□ -2.11
ZKSCAN3Q9BRR0 RNA5SP432-201ENST00000362480 116 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 Y_RNA.316-201ENST00000365118 111 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 Y_RNA.330-201ENST00000365230 109 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-243P-201ENST00000391140 107 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 RPS27P16-201ENST00000425758 201 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-857P-201ENST00000515893 110 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR4255-201ENST00000579351 72 ntBASIC1.88□□□□□ -2.11
ZKSCAN3Q9BRR0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORD36A-201ENST00000362874 73 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-24P-201ENST00000384440 107 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR516A2-201ENST00000384888 90 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR516A1-201ENST00000385033 90 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR1323-201ENST00000408090 73 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU7-85P-201ENST00000458851 63 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 AC023790.1-201ENST00000482174 347 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORA31.2-201ENST00000516019 134 ntBASIC1.87□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR101-2-201ENST00000362195 79 ntBASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU4-32P-201ENST00000363404 141 ntBASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 Y_RNA.244-201ENST00000364484 109 ntBASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 RNA5SP363-201ENST00000365072 115 ntBASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 AL645939.4-201ENST00000604495 135 ntBASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU7-10P-201ENST00000607194 63 ntBASIC1.86□□□□□ -2.11
ZKSCAN3Q9BRR0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORA75.2-201ENST00000391138 150 ntBASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORA75.3-201ENST00000391231 150 ntBASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORD83.1-201ENST00000411362 77 ntBASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 snoU13.21-201ENST00000459368 105 ntBASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 AC036111.3-201ENST00000526389 112 ntBASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 AC140658.3-201ENST00000567603 271 ntBASIC1.85□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-934P-201ENST00000365154 107 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORD100-201ENST00000408573 76 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 SNORD63B-201ENST00000411005 70 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 snoU13.11-201ENST00000459219 104 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-902P-201ENST00000517212 91 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR548H5-201ENST00000580314 60 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR6082-201ENST00000613604 109 ntBASIC1.84□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU1-42P-201ENST00000364033 160 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU6-482P-201ENST00000391068 107 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU6-466P-201ENST00000391224 103 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR934-201ENST00000401241 83 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 SNORD111-201ENST00000408139 94 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 AL591704.2-201ENST00000421658 181 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 AC108667.1-201ENST00000428618 249 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU6-65P-201ENST00000516332 98 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU6-765P-201ENST00000516916 99 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR4536-1-201ENST00000583537 88 ntBASIC1.83□□□□□ -2.12
ZKSCAN3Q9BRR0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 Y_RNA.13-201ENST00000362403 112 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR635-201ENST00000384830 98 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 AC019288.1-201ENST00000557918 224 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR4771-2-201ENST00000577758 74 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR4771-1-201ENST00000582617 74 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 AC013244.2-201ENST00000603396 103 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 BX248123.2-201ENST00000606318 124 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 AC106800.4-201ENST00000614905 153 ntBASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.82□□□□□ -2.12
ZKSCAN3Q9BRR0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 Y_RNA.283-201ENST00000364798 112 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU6-811P-201ENST00000384069 107 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR125B2-201ENST00000385128 89 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU4-62P-201ENST00000410125 130 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU7-106P-201ENST00000459514 67 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU7-153P-201ENST00000516455 62 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR3122-201ENST00000577243 73 ntBASIC1.81□□□□□ -2.12
ZKSCAN3Q9BRR0 Y_RNA.56-201ENST00000362798 112 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 Y_RNA.508-201ENST00000384502 114 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 Y_RNA.536-201ENST00000384621 113 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR519A1-201ENST00000385257 85 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 SNORA25.13-201ENST00000516395 103 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 SNORD53B-201ENST00000577887 78 ntBASIC1.8□□□□□ -2.12
ZKSCAN3Q9BRR0 SNORA80D-201ENST00000384488 135 ntBASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR1304-201ENST00000408243 91 ntBASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU7-21P-201ENST00000459430 62 ntBASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 RNU6-237P-201ENST00000515985 71 ntBASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 MIR4712-201ENST00000583750 82 ntBASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 SNORD92-201ENST00000585078 85 ntBASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
ZKSCAN3Q9BRR0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms