Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC140658.3-201ENST00000567603 271 ntBASIC1.55□□□□□ -2.16
CLIP3Q96DZ5 MIR4255-201ENST00000579351 72 ntBASIC1.55□□□□□ -2.16
CLIP3Q96DZ5 MIR4264-201ENST00000583520 66 ntBASIC1.55□□□□□ -2.16
CLIP3Q96DZ5 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.55□□□□□ -2.16
CLIP3Q96DZ5 RNU6-1296P-201ENST00000383879 107 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 MIR150-201ENST00000385048 84 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 MT-TN-201ENST00000387400 73 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 RNU7-85P-201ENST00000458851 63 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 SNORD4B-201ENST00000459083 72 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 AC093729.1-201ENST00000513074 128 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 RNU6-850P-201ENST00000516934 103 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 AC019288.1-201ENST00000557918 224 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 MIR4303-201ENST00000581299 66 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 SNORA4-201ENST00000584302 138 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 AP000753.3-201ENST00000604083 169 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 MIR6516-201ENST00000630554 81 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 U6.109-201ENST00000636749 87 ntBASIC1.54□□□□□ -2.16
CLIP3Q96DZ5 RNU6-205P-201ENST00000390858 107 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 RNU6-1165P-201ENST00000410119 107 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 RNU4-62P-201ENST00000410125 130 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 RNU7-153P-201ENST00000516455 62 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 MIR4500-201ENST00000579472 76 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 MIR4712-201ENST00000583750 82 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 MIR8066-201ENST00000617280 78 ntBASIC1.53□□□□□ -2.16
CLIP3Q96DZ5 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CLIP3Q96DZ5 RNA5SP327-201ENST00000362494 101 ntBASIC1.52□□□□□ -2.17
CLIP3Q96DZ5 Y_RNA.119-201ENST00000363301 96 ntBASIC1.52□□□□□ -2.17
CLIP3Q96DZ5 RNU6-519P-201ENST00000410590 108 ntBASIC1.52□□□□□ -2.17
CLIP3Q96DZ5 BX248123.2-201ENST00000606318 124 ntBASIC1.52□□□□□ -2.17
CLIP3Q96DZ5 AL512598.1-201ENST00000610158 273 ntBASIC1.52□□□□□ -2.17
CLIP3Q96DZ5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNA5SP264-201ENST00000363115 107 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNU1-42P-201ENST00000364033 160 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNU6-654P-201ENST00000364373 107 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNU6-580P-201ENST00000365159 107 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNU6-571P-201ENST00000384128 107 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNU6-910P-201ENST00000390844 107 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 SNORA67.6-201ENST00000391093 99 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 BX276092.1-201ENST00000427368 251 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 RNU7-62P-201ENST00000458856 62 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 MIR2115-201ENST00000516657 100 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 SNORA70.22-201ENST00000517160 124 ntBASIC1.51□□□□□ -2.17
CLIP3Q96DZ5 MIR377-201ENST00000362145 69 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 Y_RNA.57-201ENST00000362806 113 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 RNU6-776P-201ENST00000364403 104 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 RNU6-1022P-201ENST00000365049 104 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 Y_RNA.648-201ENST00000459455 110 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 RNU11-2P-201ENST00000516898 142 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 MIR4498-201ENST00000577599 66 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 snoU13.31-201ENST00000607291 104 ntBASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
CLIP3Q96DZ5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 MIR103A2-201ENST00000362154 78 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 MIR26B-201ENST00000362251 77 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 SNORA25-201ENST00000384384 134 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 MIR517C-201ENST00000385103 95 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 MT-TF-201ENST00000387314 71 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 Y_RNA.588-201ENST00000391254 102 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 RNU6-1053P-201ENST00000515930 101 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 RNU6-65P-201ENST00000516332 98 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 AL645939.4-201ENST00000604495 135 ntBASIC1.49□□□□□ -2.17
CLIP3Q96DZ5 SNORD36A-201ENST00000362874 73 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 RNU6-624P-201ENST00000363411 107 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 SNORA80D-201ENST00000384488 135 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 MIR222-201ENST00000384992 110 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 RNA5SP95-201ENST00000410319 137 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 RNU6-955P-201ENST00000410497 104 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 AC023790.1-201ENST00000482174 347 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 SNORA25.13-201ENST00000516395 103 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 RNU1-92P-201ENST00000517017 135 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 MIR4491-201ENST00000581087 68 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 MIR4662A-201ENST00000637499 67 ntBASIC1.48□□□□□ -2.17
CLIP3Q96DZ5 RNU6-478P-201ENST00000363904 110 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 Y_RNA.363-201ENST00000365529 113 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 SNORD12-201ENST00000391002 90 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 MIR1236-201ENST00000408340 102 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 AP1B1P2-201ENST00000416196 106 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 snoU13.11-201ENST00000459219 104 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 SNORD79.1-201ENST00000516069 84 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.47□□□□□ -2.17
CLIP3Q96DZ5 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.17
CLIP3Q96DZ5 RNU4-32P-201ENST00000363404 141 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 SNORD115-37-201ENST00000363768 82 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 RNU6-1229P-201ENST00000364295 107 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 MIR516A2-201ENST00000384888 90 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 MIR516A1-201ENST00000385033 90 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 AL591704.2-201ENST00000421658 181 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 RNU7-106P-201ENST00000459514 67 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 RNU6-75P-201ENST00000515944 104 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 SNORA25.16-201ENST00000516741 121 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 SNORA31.24-201ENST00000517232 57 ntBASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CLIP3Q96DZ5 RNU6-315P-201ENST00000362666 107 ntBASIC1.45□□□□□ -2.18
CLIP3Q96DZ5 Y_RNA.164-201ENST00000363709 102 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 163.8 ms