Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MIR618-201ENST00000385287 98 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 SNRPGP12-201ENST00000449481 213 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 Y_RNA.659-201ENST00000515994 113 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 RNU6-1194P-201ENST00000516208 104 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 MIR4771-2-201ENST00000577758 74 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 MIR4771-1-201ENST00000582617 74 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 MIR548Z-201ENST00000584743 97 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 MIR8066-201ENST00000617280 78 ntBASIC1.34□□□□□ -2.19
ERCC4Q92889 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.34□□□□□ -2.19
ERCC4Q92889 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
ERCC4Q92889 Y_RNA.118-201ENST00000363300 101 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 MIR222-201ENST00000384992 110 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 AC015818.7-201ENST00000428754 109 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 AC087499.7-201ENST00000441958 109 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.33□□□□□ -2.2
ERCC4Q92889 SNORA25.16-201ENST00000516741 121 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 AC090897.1-201ENST00000580909 226 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 RNU6-90P-201ENST00000606352 106 ntBASIC1.33□□□□□ -2.2
ERCC4Q92889 Y_RNA.42-201ENST00000362660 108 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 RNU6-392P-201ENST00000364926 101 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 RNU4-83P-201ENST00000410863 133 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 AC109327.2-201ENST00000448339 378 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 MIR4676-201ENST00000583078 72 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 SNORD92-201ENST00000585078 85 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.32□□□□□ -2.2
ERCC4Q92889 MIR1827-201ENST00000408549 66 ntBASIC1.31□□□□□ -2.2
ERCC4Q92889 MIR1285-1-201ENST00000408593 84 ntBASIC1.31□□□□□ -2.2
ERCC4Q92889 RNU6-765P-201ENST00000516916 99 ntBASIC1.31□□□□□ -2.2
ERCC4Q92889 RNA5SP170-201ENST00000517150 101 ntBASIC1.31□□□□□ -2.2
ERCC4Q92889 MIR6082-201ENST00000613604 109 ntBASIC1.31□□□□□ -2.2
ERCC4Q92889 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
ERCC4Q92889 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.3□□□□□ -2.2
ERCC4Q92889 RNU4-58P-201ENST00000363192 141 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 RNU6-1244P-201ENST00000363614 108 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 RNU1-124P-201ENST00000363861 145 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 Y_RNA.467-201ENST00000384297 102 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 RNU6-531P-201ENST00000516694 104 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 MIR4500-201ENST00000579472 76 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 MIR4804-201ENST00000581683 73 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 MIR6078-201ENST00000611069 100 ntBASIC1.3□□□□□ -2.2
ERCC4Q92889 Y_RNA.13-201ENST00000362403 112 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 Y_RNA.96-201ENST00000363092 109 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 Y_RNA.224-201ENST00000364308 111 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 Y_RNA.342-201ENST00000365352 113 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 MIR488-201ENST00000365739 83 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 RNU6-571P-201ENST00000384128 107 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 Y_RNA.567-201ENST00000384736 106 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 RNU6-644P-201ENST00000391155 98 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 RNU6-994P-201ENST00000410507 111 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 snoU13.18-201ENST00000459483 104 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 OR2A41P-201ENST00000473586 105 ntBASIC1.29□□□□□ -2.2
ERCC4Q92889 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
ERCC4Q92889 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.28□□□□□ -2.2
ERCC4Q92889 RNU6-403P-201ENST00000363163 104 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 RNU6-53P-201ENST00000365367 106 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 RNU6-813P-201ENST00000384691 107 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 SPINT5P-201ENST00000448174 155 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 RNU7-56P-201ENST00000458744 62 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 RNU7-61P-201ENST00000515897 61 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 Y_RNA.705-201ENST00000516862 110 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 RNA5SP404-201ENST00000517118 132 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 MTND5P40-201ENST00000559945 246 ntBASIC1.28□□□□□ -2.2
ERCC4Q92889 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
ERCC4Q92889 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.27□□□□□ -2.21
ERCC4Q92889 MIR1-1-201ENST00000362147 71 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 Y_RNA.43-201ENST00000362670 111 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
ERCC4Q92889 MIR938-201ENST00000401216 83 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 RNU7-156P-201ENST00000517214 74 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.27□□□□□ -2.21
ERCC4Q92889 RNU6-86P-201ENST00000606534 107 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 MALAT1.1-201ENST00000618249 95 ntBASIC1.27□□□□□ -2.21
ERCC4Q92889 RNU6-972P-201ENST00000391208 107 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 RNU6-887P-201ENST00000410660 100 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 BX276092.1-201ENST00000427368 251 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 RNU6-850P-201ENST00000516934 103 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 MIR5582-201ENST00000579697 68 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 MIR6504-201ENST00000613520 61 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 MIR7111-201ENST00000619751 72 ntBASIC1.26□□□□□ -2.21
ERCC4Q92889 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
ERCC4Q92889 Y_RNA.290-201ENST00000364879 114 ntBASIC1.25□□□□□ -2.21
ERCC4Q92889 Y_RNA.369-201ENST00000365568 117 ntBASIC1.25□□□□□ -2.21
ERCC4Q92889 SNORA72.6-201ENST00000384520 129 ntBASIC1.25□□□□□ -2.21
ERCC4Q92889 MIR200A-201ENST00000384875 90 ntBASIC1.25□□□□□ -2.21
ERCC4Q92889 RNU6-1110P-201ENST00000516462 101 ntBASIC1.25□□□□□ -2.21
ERCC4Q92889 AC013244.2-201ENST00000603396 103 ntBASIC1.25□□□□□ -2.21
ERCC4Q92889 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
ERCC4Q92889 Y_RNA.191-201ENST00000363972 113 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 Y_RNA.355-201ENST00000365462 98 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 MIR100-201ENST00000385259 80 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 FABP5P4-201ENST00000437203 171 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 AC067940.1-201ENST00000458411 300 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 RNU7-102P-201ENST00000458948 62 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 RNU6-977P-201ENST00000516411 103 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 AL078603.1-201ENST00000603824 313 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 AC008608.1-201ENST00000603910 127 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 U7.3-201ENST00000616123 62 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 RMST_2.1-201ENST00000617263 136 ntBASIC1.24□□□□□ -2.21
ERCC4Q92889 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 208.5 ms