Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR140-201ENST00000385282 100 ntBASIC0.38□□□□□ -2.35
ZNF540Q8NDQ6 MIR1263-201ENST00000408324 86 ntBASIC0.38□□□□□ -2.35
ZNF540Q8NDQ6 SNORA31.14-201ENST00000516728 116 ntBASIC0.38□□□□□ -2.35
ZNF540Q8NDQ6 MTND5P18-201ENST00000445624 1801 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 SNORA36.1-201ENST00000363424 132 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.448-201ENST00000384185 108 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.528-201ENST00000384575 108 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP136-201ENST00000410906 107 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 RNU7-2P-201ENST00000516096 62 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-659P-201ENST00000516454 104 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 RNU7-6P-201ENST00000516845 62 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.712-201ENST00000517011 92 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 MIR376B-201ENST00000614515 100 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 MIR3914-2-201ENST00000637339 95 ntBASIC0.37□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.71-201ENST00000362892 104 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.119-201ENST00000363301 96 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.127-201ENST00000363386 109 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 SNORA63.5-201ENST00000363548 123 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 SNORD115-35-201ENST00000365122 82 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 SNORA72.6-201ENST00000384520 129 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.536-201ENST00000384621 113 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 MIR34C-201ENST00000384831 77 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 MIR548D2-201ENST00000384955 97 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 MIR644A-201ENST00000385262 94 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1211P-201ENST00000459179 105 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1194P-201ENST00000516208 104 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP94-201ENST00000516917 108 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-1006P-201ENST00000516998 103 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 MIR3678-201ENST00000578455 94 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 AC025166.1-201ENST00000612411 163 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 AL035470.1-201ENST00000622571 220 ntBASIC0.36□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP457-201ENST00000363657 124 ntBASIC0.35□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP517-201ENST00000364724 117 ntBASIC0.35□□□□□ -2.35
ZNF540Q8NDQ6 RNU6-80P-201ENST00000384195 107 ntBASIC0.35□□□□□ -2.35
ZNF540Q8NDQ6 RNU7-48P-201ENST00000458875 63 ntBASIC0.35□□□□□ -2.35
ZNF540Q8NDQ6 RNA5SP134-201ENST00000516492 96 ntBASIC0.35□□□□□ -2.35
ZNF540Q8NDQ6 MIR3163-201ENST00000581592 73 ntBASIC0.35□□□□□ -2.35
ZNF540Q8NDQ6 Y_RNA.328-201ENST00000365208 113 ntBASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-81P-201ENST00000365608 104 ntBASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-679P-201ENST00000391003 106 ntBASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 RPL39P25-201ENST00000449384 154 ntBASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 SNORD33.1-201ENST00000516213 88 ntBASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-1061P-201ENST00000516530 99 ntBASIC0.34□□□□□ -2.36
ZNF540Q8NDQ6 AL157777.2-201ENST00000258070 137 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 MIR330-201ENST00000362196 94 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 RNU4-58P-201ENST00000363192 141 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 RNA5SP325-201ENST00000363756 130 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.213-201ENST00000364178 111 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.247-201ENST00000364500 92 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.353-201ENST00000365440 108 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.362-201ENST00000365518 110 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 MIR539-201ENST00000365690 78 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNORD116-14-201ENST00000383894 92 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNORD116-17-201ENST00000383929 92 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNORD116-15-201ENST00000384445 92 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.549-201ENST00000384657 102 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-535P-201ENST00000384722 107 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNORD116-19-201ENST00000384729 92 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNORD77B-201ENST00000391112 67 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNRPGP12-201ENST00000449481 213 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 SNORA68.3-201ENST00000515906 83 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-521P-201ENST00000516663 105 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.697-201ENST00000516776 113 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 MIR8087-201ENST00000612745 78 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 MIR6828-201ENST00000636181 60 ntBASIC0.33□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-429P-201ENST00000384582 108 ntBASIC0.32□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-959P-201ENST00000384671 107 ntBASIC0.32□□□□□ -2.36
ZNF540Q8NDQ6 TRAJ51-201ENST00000504127 63 ntBASIC0.32□□□□□ -2.36
ZNF540Q8NDQ6 SNORA62.5-201ENST00000516634 120 ntBASIC0.32□□□□□ -2.36
ZNF540Q8NDQ6 RNA5SP47-201ENST00000517230 109 ntBASIC0.32□□□□□ -2.36
ZNF540Q8NDQ6 AP001362.1-201ENST00000625165 124 ntBASIC0.32□□□□□ -2.36
ZNF540Q8NDQ6 MIRLET7D-201ENST00000362263 87 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-363P-201ENST00000362895 105 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 RNU4-67P-201ENST00000364569 141 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.261-201ENST00000364631 102 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 RNA5SP117-201ENST00000365294 118 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.360-201ENST00000365512 102 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 SNORA8.2-201ENST00000384372 139 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 SNORD28-201ENST00000384706 75 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.563-201ENST00000384707 108 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 MIR548M-201ENST00000408260 86 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 BX276092.1-201ENST00000427368 251 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 AC244505.6-201ENST00000452829 130 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 MIR3910-1-201ENST00000580936 111 ntBASIC0.31□□□□□ -2.36
ZNF540Q8NDQ6 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-1313P-201ENST00000362622 102 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.56-201ENST00000362798 112 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.85-201ENST00000363014 111 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.98-201ENST00000363109 102 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 SNORD118-201ENST00000363593 134 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.174-201ENST00000363781 105 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 RNU6-1327P-201ENST00000365302 105 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 SNORD113-1-201ENST00000365321 69 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 Y_RNA.567-201ENST00000384736 106 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 RNU7-161P-201ENST00000517289 62 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 DEFB131E-201ENST00000532329 154 ntBASIC0.3□□□□□ -2.36
ZNF540Q8NDQ6 MIR4679-2-201ENST00000578358 77 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 178.8 ms