Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 Y_RNA.659-201ENST00000515994 113 ntBASIC0.97□□□□□ -2.25
CLRN3Q8NCR9 AL512598.1-201ENST00000610158 273 ntBASIC0.97□□□□□ -2.25
CLRN3Q8NCR9 uc_338.28-201ENST00000612082 187 ntBASIC0.97□□□□□ -2.25
CLRN3Q8NCR9 RNU6-482P-201ENST00000391068 107 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.601-201ENST00000410500 113 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 RNU6-469P-201ENST00000516253 101 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 AC138907.6-201ENST00000568401 126 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 AC138869.1-201ENST00000568623 124 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 MIR4439-201ENST00000583746 80 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 AC211469.2-201ENST00000605461 205 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 MIR6715A-201ENST00000615929 79 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 ZNF209P-201ENST00000593450 2304 ntBASIC0.96□□□□□ -2.26
CLRN3Q8NCR9 RNU6-170P-201ENST00000362832 104 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 RNU1-17P-201ENST00000363022 152 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.247-201ENST00000364500 92 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 AL031737.1-201ENST00000450125 223 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 ACA64.5-201ENST00000516207 127 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 RNU1-92P-201ENST00000517017 135 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 MIR4524B-201ENST00000581569 115 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 uc_338.16-201ENST00000621804 95 ntBASIC0.95□□□□□ -2.26
CLRN3Q8NCR9 SNORA51.5-201ENST00000384126 131 ntBASIC0.94□□□□□ -2.26
CLRN3Q8NCR9 RNU6-904P-201ENST00000516206 101 ntBASIC0.94□□□□□ -2.26
CLRN3Q8NCR9 RNU6-850P-201ENST00000516934 103 ntBASIC0.94□□□□□ -2.26
CLRN3Q8NCR9 RNU6-766P-201ENST00000362478 107 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 RNU6-1187P-201ENST00000364771 110 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 RNU6-756P-201ENST00000383997 107 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 RNU6-110P-201ENST00000384508 104 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 RNA5SP222-201ENST00000411039 105 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 AC092628.1-201ENST00000436250 252 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 RNU1-123P-201ENST00000458950 160 ntBASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.93□□□□□ -2.26
CLRN3Q8NCR9 MIR18A-201ENST00000362310 71 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.32-201ENST00000362589 110 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.173-201ENST00000363776 113 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.342-201ENST00000365352 113 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.567-201ENST00000384736 106 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 SCARNA23-201ENST00000516060 130 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 SNORA31.14-201ENST00000516728 116 ntBASIC0.92□□□□□ -2.26
CLRN3Q8NCR9 MIR519A1-201ENST00000385257 85 ntBASIC0.91□□□□□ -2.26
CLRN3Q8NCR9 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.818-201ENST00000618813 71 ntBASIC0.91□□□□□ -2.26
CLRN3Q8NCR9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.91□□□□□ -2.26
CLRN3Q8NCR9 Y_RNA.96-201ENST00000363092 109 ntBASIC0.9□□□□□ -2.27
CLRN3Q8NCR9 RNU6-1125P-201ENST00000363601 107 ntBASIC0.9□□□□□ -2.27
CLRN3Q8NCR9 RNU6-480P-201ENST00000384332 107 ntBASIC0.9□□□□□ -2.27
CLRN3Q8NCR9 SNORD63B-201ENST00000411005 70 ntBASIC0.9□□□□□ -2.27
CLRN3Q8NCR9 AC097635.1-201ENST00000450678 155 ntBASIC0.9□□□□□ -2.27
CLRN3Q8NCR9 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
CLRN3Q8NCR9 Y_RNA.57-201ENST00000362806 113 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 Y_RNA.95-201ENST00000363079 95 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 RNU6-44P-201ENST00000384045 107 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 Y_RNA.544-201ENST00000384650 113 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 MIR764-201ENST00000390811 85 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 AC244505.6-201ENST00000452829 130 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 TRAJ51-201ENST00000504127 63 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 MIR3613-201ENST00000579844 87 ntBASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CLRN3Q8NCR9 SNORA63.4-201ENST00000362763 126 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 RNU6-1163P-201ENST00000364516 107 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 SNORA19.1-201ENST00000410656 129 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 MIR4421-201ENST00000578133 69 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 MIR3678-201ENST00000578455 94 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 MIR4295-201ENST00000585286 85 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
CLRN3Q8NCR9 MIR378A-201ENST00000362177 66 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 SNORA7.1-201ENST00000363750 139 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 RNU6-1229P-201ENST00000364295 107 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 MIR590-201ENST00000385008 97 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 SNORA17.3-201ENST00000391159 129 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 AC109327.2-201ENST00000448339 378 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 AC004223.1-201ENST00000479840 271 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 MIR4303-201ENST00000581299 66 ntBASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.87□□□□□ -2.27
CLRN3Q8NCR9 RNU6-1244P-201ENST00000363614 108 ntBASIC0.86□□□□□ -2.27
CLRN3Q8NCR9 RNA5SP245-201ENST00000364239 121 ntBASIC0.86□□□□□ -2.27
CLRN3Q8NCR9 SNORA36.2-201ENST00000384004 127 ntBASIC0.86□□□□□ -2.27
CLRN3Q8NCR9 MIR4639-201ENST00000584938 69 ntBASIC0.86□□□□□ -2.27
CLRN3Q8NCR9 MIR450A1-201ENST00000362262 91 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 MIR599-201ENST00000385069 95 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 MIR644A-201ENST00000385262 94 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 MIR140-201ENST00000385282 100 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 SNORA40.6-201ENST00000391153 128 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 RNU6-1254P-201ENST00000391266 104 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 RNU4-62P-201ENST00000410125 130 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 AC108667.1-201ENST00000428618 249 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 RNU6-237P-201ENST00000515985 71 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 Y_RNA.809-201ENST00000516058 95 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 RNA5SP458-201ENST00000516188 119 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 RNU6-537P-201ENST00000517277 103 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 AL353770.2-201ENST00000620024 78 ntBASIC0.85□□□□□ -2.27
CLRN3Q8NCR9 RNU6-1260P-201ENST00000362944 107 ntBASIC0.84□□□□□ -2.27
CLRN3Q8NCR9 Y_RNA.93-201ENST00000363066 109 ntBASIC0.84□□□□□ -2.27
CLRN3Q8NCR9 Y_RNA.107-201ENST00000363190 121 ntBASIC0.84□□□□□ -2.27
CLRN3Q8NCR9 RNU6-813P-201ENST00000384691 107 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 181.4 ms