Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORD77B-201ENST00000391112 67 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 RNU4-69P-201ENST00000410677 143 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 BX276092.1-201ENST00000427368 251 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 MTATP6P21-201ENST00000440681 189 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 RNU7-74P-201ENST00000459104 62 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 MTATP8P1-201ENST00000467115 207 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 RNU6-240P-201ENST00000516098 97 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 RNU7-13P-201ENST00000516413 62 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 MIR516B1-201ENST00000385211 90 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 MIR876-201ENST00000401147 81 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 RNU7-164P-201ENST00000459221 62 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 RNU6-138P-201ENST00000515952 107 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 SNORA25.13-201ENST00000516395 103 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 AC044792.1-201ENST00000593294 196 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 MIR548AZ-201ENST00000616567 95 ntBASIC-0.63□□□□□ -2.51
HDDC3Q8N4P3 MIR206-201ENST00000384872 86 ntBASIC-0.64□□□□□ -2.51
HDDC3Q8N4P3 MIR548I2-201ENST00000408348 149 ntBASIC-0.64□□□□□ -2.51
HDDC3Q8N4P3 MIR548H3-201ENST00000408771 118 ntBASIC-0.64□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.65□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.65□□□□□ -2.51
HDDC3Q8N4P3 IGKV1-22-201ENST00000524313 326 ntBASIC-0.65□□□□□ -2.51
HDDC3Q8N4P3 AP001362.1-201ENST00000625165 124 ntBASIC-0.65□□□□□ -2.51
HDDC3Q8N4P3 AL162726.3-218ENST00000636401 95 ntBASIC-0.65□□□□□ -2.51
HDDC3Q8N4P3 RNU6-818P-201ENST00000364837 108 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 RNY4P28-201ENST00000365281 93 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.574-201ENST00000384766 95 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 AC109327.2-201ENST00000448339 378 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 AL117351.2-201ENST00000513571 157 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 RNY1P9-201ENST00000532431 109 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 MIR4263-201ENST00000584745 83 ntBASIC-0.66□□□□□ -2.52
HDDC3Q8N4P3 RNU6-865P-201ENST00000364772 107 ntBASIC-0.67□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.67□□□□□ -2.52
HDDC3Q8N4P3 MIR1270-201ENST00000459320 83 ntBASIC-0.67□□□□□ -2.52
HDDC3Q8N4P3 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.67□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 RNU6-472P-201ENST00000384299 107 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 RNA5SP300-201ENST00000391197 107 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 SNORD75.1-201ENST00000408373 60 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 RNU7-195P-201ENST00000458793 62 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 MIR4308-201ENST00000580634 81 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 MIR3920-201ENST00000581751 86 ntBASIC-0.68□□□□□ -2.52
HDDC3Q8N4P3 RNU6-867P-201ENST00000364956 107 ntBASIC-0.69□□□□□ -2.52
HDDC3Q8N4P3 MIR519A1-201ENST00000385257 85 ntBASIC-0.69□□□□□ -2.52
HDDC3Q8N4P3 SNORD63B-201ENST00000411005 70 ntBASIC-0.69□□□□□ -2.52
HDDC3Q8N4P3 RNU7-123P-201ENST00000515911 60 ntBASIC-0.69□□□□□ -2.52
HDDC3Q8N4P3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.69□□□□□ -2.52
HDDC3Q8N4P3 AP001094.1-201ENST00000579805 193 ntBASIC-0.69□□□□□ -2.52
HDDC3Q8N4P3 RNU6-170P-201ENST00000362832 104 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.422-201ENST00000384054 114 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 RNU6-768P-201ENST00000384683 107 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 MT-TQ-201ENST00000387372 72 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 RNU2-38P-201ENST00000410856 79 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 MTCYBP6-201ENST00000441810 138 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.701-201ENST00000516812 110 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.720-201ENST00000517166 92 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 U6.106-201ENST00000636360 105 ntBASIC-0.7□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.75-201ENST00000362927 97 ntBASIC-0.71□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.71□□□□□ -2.52
HDDC3Q8N4P3 RNU7-2P-201ENST00000516096 62 ntBASIC-0.71□□□□□ -2.52
HDDC3Q8N4P3 uc_338.36-201ENST00000622331 158 ntBASIC-0.71□□□□□ -2.52
HDDC3Q8N4P3 MIR4788-201ENST00000639104 80 ntBASIC-0.71□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 SNORD27-201ENST00000363981 72 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 RNU6-524P-201ENST00000384270 107 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.626-201ENST00000411288 95 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 MTND5P40-201ENST00000559945 246 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 MIR4473-201ENST00000583731 91 ntBASIC-0.72□□□□□ -2.52
HDDC3Q8N4P3 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.73□□□□□ -2.53
HDDC3Q8N4P3 RNU1-141P-201ENST00000364623 158 ntBASIC-0.73□□□□□ -2.53
HDDC3Q8N4P3 SNORD14C-201ENST00000365382 88 ntBASIC-0.73□□□□□ -2.53
HDDC3Q8N4P3 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-0.73□□□□□ -2.53
HDDC3Q8N4P3 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 SNORD18B-201ENST00000365659 72 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 SNORA75.5-201ENST00000391291 81 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 MTND2P23-201ENST00000422990 651 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 AC107027.2-201ENST00000512197 115 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 AC009779.6-201ENST00000603972 165 ntBASIC-0.74□□□□□ -2.53
HDDC3Q8N4P3 RNU6-571P-201ENST00000384128 107 ntBASIC-0.75□□□□□ -2.53
HDDC3Q8N4P3 U8.6-201ENST00000364939 135 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 SNX3P1X-201ENST00000414887 175 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 AC244250.2-201ENST00000418731 148 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 SNORD127-201ENST00000458892 86 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 SNORD126-201ENST00000459475 77 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 uc_338.10-201ENST00000621872 182 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 MIR6844-201ENST00000637122 62 ntBASIC-0.76□□□□□ -2.53
HDDC3Q8N4P3 RNU6-797P-201ENST00000363101 109 ntBASIC-0.77□□□□□ -2.53
HDDC3Q8N4P3 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.77□□□□□ -2.53
HDDC3Q8N4P3 RNU6-1227P-201ENST00000383981 107 ntBASIC-0.77□□□□□ -2.53
HDDC3Q8N4P3 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.77□□□□□ -2.53
HDDC3Q8N4P3 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.77□□□□□ -2.53
HDDC3Q8N4P3 RNU7-188P-201ENST00000517063 64 ntBASIC-0.77□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 203.3 ms