Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-718P-201ENST00000516166 105 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 RNA5SP180-201ENST00000516181 101 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.12□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-502P-201ENST00000362419 108 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-103P-201ENST00000363686 107 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.197-201ENST00000364004 102 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 AC016907.1-201ENST00000419483 435 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 SNORD22.1-201ENST00000516331 125 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 MIR548AG2-201ENST00000581228 64 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 AC021443.1-201ENST00000604478 211 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 AC080013.6-201ENST00000606185 215 ntBASIC-1.13□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.813-201ENST00000364639 102 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-287P-201ENST00000516230 98 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-170P-201ENST00000362832 104 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-326P-201ENST00000365480 107 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.516-201ENST00000384541 124 ntBASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.14□□□□□ -2.59
CCDC88AQ3V6T2 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.15□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.15□□□□□ -2.59
CCDC88AQ3V6T2 MIR2113-201ENST00000459007 91 ntBASIC-1.15□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.15□□□□□ -2.59
CCDC88AQ3V6T2 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.15□□□□□ -2.59
CCDC88AQ3V6T2 RNU4-17P-201ENST00000365598 141 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 RNU6-721P-201ENST00000410155 105 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 RNU2-35P-201ENST00000516446 142 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 MIR4744-201ENST00000581563 82 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 PART1_1.1-201ENST00000611761 217 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 AP001362.1-201ENST00000625165 124 ntBASIC-1.16□□□□□ -2.59
CCDC88AQ3V6T2 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.16□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-119P-201ENST00000364882 107 ntBASIC-1.16□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.16□□□□□ -2.6
CCDC88AQ3V6T2 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.16□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.3-201ENST00000362331 103 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-211P-201ENST00000384047 107 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 SNORD116-2-201ENST00000384274 95 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-102P-201ENST00000384485 104 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 SNORA49-201ENST00000386157 136 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 MIR548F1-201ENST00000408667 84 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 RNU7-2P-201ENST00000516096 62 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 SNORD38.3-201ENST00000516599 73 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 SNORA40.17-201ENST00000517256 115 ntBASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.17□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-623P-201ENST00000363143 105 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 MIR1302-11-201ENST00000408051 138 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 MIR1302-9-201ENST00000408365 138 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 MIR1302-10-201ENST00000408734 138 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 RNU4-69P-201ENST00000410677 143 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 RNU7-123P-201ENST00000515911 60 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 AC138907.4-201ENST00000570107 226 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 MIR4499-201ENST00000584834 69 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 MIR1302-2-201ENST00000607096 138 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-561P-201ENST00000516222 102 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 SNORD116.3-201ENST00000517176 78 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 MIR376B-201ENST00000614515 100 ntBASIC-1.18□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-690P-201ENST00000365242 106 ntBASIC-1.19□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-662P-201ENST00000384253 104 ntBASIC-1.19□□□□□ -2.6
CCDC88AQ3V6T2 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.19□□□□□ -2.6
CCDC88AQ3V6T2 MIR4460-201ENST00000577862 86 ntBASIC-1.19□□□□□ -2.6
CCDC88AQ3V6T2 MIR335-201ENST00000362173 94 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-818P-201ENST00000364837 108 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-472P-201ENST00000384299 107 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 MIR548AE1-201ENST00000583292 70 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 AC093783.1-201ENST00000612976 329 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 AC084781.2-201ENST00000615568 161 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 RNU7-106P-201ENST00000459514 67 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 U6.100-201ENST00000636230 99 ntBASIC-1.2□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.21□□□□□ -2.6
CCDC88AQ3V6T2 RNU6-905P-201ENST00000384434 107 ntBASIC-1.21□□□□□ -2.6
CCDC88AQ3V6T2 MIRLET7B-201ENST00000385140 83 ntBASIC-1.21□□□□□ -2.6
CCDC88AQ3V6T2 AP000533.3-201ENST00000447704 118 ntBASIC-1.21□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 SNORD114-25-201ENST00000363742 72 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.22□□□□□ -2.6
CCDC88AQ3V6T2 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 207.7 ms