Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNORD115-17-201ENST00000364612 82 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 RNU6-429P-201ENST00000384582 108 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 MIR206-201ENST00000384872 86 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 SNORA40-201ENST00000388090 126 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 RNU6-531P-201ENST00000516694 104 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 RNA5SP94-201ENST00000516917 108 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 DEFB131E-201ENST00000532329 154 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 uc_338.17-201ENST00000619633 179 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 AC067863.3-201ENST00000624172 122 ntBASIC0.53□□□□□ -2.32
COL28A1Q2UY09 Y_RNA.119-201ENST00000363301 96 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 MIR329-2-201ENST00000385029 84 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 RNU6-1321P-201ENST00000390905 107 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 MTND5P34-201ENST00000568888 325 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 AC023932.2-201ENST00000603176 175 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 AC092634.7-201ENST00000621022 103 ntBASIC0.52□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.98-201ENST00000363109 102 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 RNU6-535P-201ENST00000384722 107 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 MIRLET7F2-201ENST00000385277 83 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 MIR759-201ENST00000390224 91 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 MIR1912-201ENST00000410389 80 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 RNU7-48P-201ENST00000458875 63 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 RNA5SP272-201ENST00000516095 111 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 RNU7-2P-201ENST00000516096 62 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 RNU6-346P-201ENST00000516288 111 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 SNORA31.14-201ENST00000516728 116 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 AC105081.1-201ENST00000617727 106 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 AC087741.2-201ENST00000619415 172 ntBASIC0.51□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.56-201ENST00000362798 112 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 SNORD18A-201ENST00000363753 72 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 SNORD115-35-201ENST00000365122 82 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 RNU6-257P-201ENST00000410238 98 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 MIR5589-201ENST00000579442 60 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.5□□□□□ -2.33
COL28A1Q2UY09 MIR101-2-201ENST00000362195 79 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 SNORD50.2-201ENST00000365465 70 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 MIR539-201ENST00000365690 78 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.448-201ENST00000384185 108 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 RNU6-616P-201ENST00000384353 107 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 MT-TI-201ENST00000387365 69 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 RNU6-679P-201ENST00000391003 106 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 MIR1263-201ENST00000408324 86 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 RNU7-6P-201ENST00000516845 62 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 MIR4802-201ENST00000581881 80 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 AP001362.1-201ENST00000625165 124 ntBASIC0.49□□□□□ -2.33
COL28A1Q2UY09 RNA5SP517-201ENST00000364724 117 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 SNORD58C-201ENST00000365223 64 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 MIR644A-201ENST00000385262 94 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 SNORA40.8-201ENST00000411034 126 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 snoU13.19-201ENST00000459148 104 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 MIR4639-201ENST00000584938 69 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 RNU7-10P-201ENST00000607194 63 ntBASIC0.48□□□□□ -2.33
COL28A1Q2UY09 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.127-201ENST00000363386 109 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.328-201ENST00000365208 113 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 RNY4P3-201ENST00000365254 95 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 RNU6-1062P-201ENST00000383908 107 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.528-201ENST00000384575 108 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.549-201ENST00000384657 102 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.567-201ENST00000384736 106 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 RNU6-781P-201ENST00000516377 101 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 Y_RNA.703-201ENST00000516846 111 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 MIR6828-201ENST00000636181 60 ntBASIC0.47□□□□□ -2.33
COL28A1Q2UY09 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
COL28A1Q2UY09 RNU4-67P-201ENST00000364569 141 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 SNORA8.2-201ENST00000384372 139 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 MIR518A1-201ENST00000385068 85 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 RNU6-1307P-201ENST00000391012 103 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 Y_RNA.586-201ENST00000391146 98 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 SNORD71-201ENST00000411292 86 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 MIR548H5-201ENST00000580314 60 ntBASIC0.46□□□□□ -2.34
COL28A1Q2UY09 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
COL28A1Q2UY09 SNORD118-201ENST00000363593 134 ntBASIC0.45□□□□□ -2.34
COL28A1Q2UY09 RNU6-865P-201ENST00000364772 107 ntBASIC0.45□□□□□ -2.34
COL28A1Q2UY09 AC244505.6-201ENST00000452829 130 ntBASIC0.45□□□□□ -2.34
COL28A1Q2UY09 SCARNA16.5-201ENST00000517114 183 ntBASIC0.45□□□□□ -2.34
COL28A1Q2UY09 RNA5SP47-201ENST00000517230 109 ntBASIC0.45□□□□□ -2.34
COL28A1Q2UY09 RNU6-235P-201ENST00000362644 107 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 SNORA36.1-201ENST00000363424 132 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 RNU6-1229P-201ENST00000364295 107 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 RNU6-746P-201ENST00000384112 109 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 SNORD28-201ENST00000384706 75 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 MIR548D2-201ENST00000384955 97 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 MIR548I2-201ENST00000408348 149 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
COL28A1Q2UY09 RNU6-1234P-201ENST00000516877 103 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 AC138869.1-201ENST00000568623 124 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 MIR3133-201ENST00000583157 78 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 AC025166.1-201ENST00000612411 163 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 MIR376B-201ENST00000614515 100 ntBASIC0.44□□□□□ -2.34
COL28A1Q2UY09 RNU6-774P-201ENST00000363238 107 ntBASIC0.43□□□□□ -2.34
COL28A1Q2UY09 RNY4P6-201ENST00000363667 96 ntBASIC0.43□□□□□ -2.34
COL28A1Q2UY09 Y_RNA.346-201ENST00000365385 112 ntBASIC0.43□□□□□ -2.34
COL28A1Q2UY09 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.43□□□□□ -2.34
COL28A1Q2UY09 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms