Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNA5SP458-201ENST00000516188 119 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 SNORA25.16-201ENST00000516741 121 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 MIR4500-201ENST00000579472 76 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 MIR4781-201ENST00000585250 76 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 AC025521.1-201ENST00000621624 286 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 ZNF209P-201ENST00000593450 2304 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 MIR378A-201ENST00000362177 66 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 Y_RNA.173-201ENST00000363776 113 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 SNORD38.1-201ENST00000363863 68 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 SNORD115-27-201ENST00000364430 82 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 MIR548G-201ENST00000408442 89 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 RNU6-237P-201ENST00000515985 71 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 AC068338.1-201ENST00000565567 176 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 MIR4421-201ENST00000578133 69 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 AC096720.1-201ENST00000604441 183 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 MIR2052-201ENST00000636055 55 ntBASIC1.14□□□□□ -2.23
HOXA4Q00056 RNU6-369P-201ENST00000362515 102 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 SNORD58A-201ENST00000383875 65 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU6-787P-201ENST00000384032 107 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 SNORD26-201ENST00000384147 75 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU6-1152P-201ENST00000384576 107 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU6-813P-201ENST00000384691 107 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 SNORD12-201ENST00000391002 90 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 MIR1257-201ENST00000408490 117 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 BX276092.1-201ENST00000427368 251 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 SPINT5P-201ENST00000448174 155 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU1-123P-201ENST00000458950 160 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 AC022137.1-201ENST00000483735 151 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU6-531P-201ENST00000516694 104 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 Y_RNA.705-201ENST00000516862 110 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU6-90P-201ENST00000606352 106 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 AL512598.1-201ENST00000610158 273 ntBASIC1.13□□□□□ -2.23
HOXA4Q00056 RNU6-497P-201ENST00000365316 104 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HOXA4Q00056 RNU6-675P-201ENST00000384236 104 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 SNORA72.6-201ENST00000384520 129 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 Y_RNA.567-201ENST00000384736 106 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 MIR181B2-201ENST00000385004 89 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 MIR450A2-201ENST00000385022 100 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 MIR125B2-201ENST00000385128 89 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
HOXA4Q00056 RNU6-972P-201ENST00000391208 107 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 RNU6-955P-201ENST00000410497 104 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 RNU6-994P-201ENST00000410507 111 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 MTND5P40-201ENST00000559945 246 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 AL513043.2-201ENST00000573941 143 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 MIR4676-201ENST00000583078 72 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 AC027335.2-201ENST00000624030 375 ntBASIC1.12□□□□□ -2.23
HOXA4Q00056 MIR26B-201ENST00000362251 77 ntBASIC1.11□□□□□ -2.23
HOXA4Q00056 RNY1P4-201ENST00000384595 115 ntBASIC1.11□□□□□ -2.23
HOXA4Q00056 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.11□□□□□ -2.23
HOXA4Q00056 RNA5SP225-201ENST00000410874 135 ntBASIC1.11□□□□□ -2.23
HOXA4Q00056 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.11□□□□□ -2.23
HOXA4Q00056 AC019288.1-201ENST00000557918 224 ntBASIC1.11□□□□□ -2.23
HOXA4Q00056 MIR4668-201ENST00000582284 70 ntBASIC1.11□□□□□ -2.23
HOXA4Q00056 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
HOXA4Q00056 HSBP1P2-201ENST00000299671 229 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 Y_RNA.13-201ENST00000362403 112 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 RNU6-228P-201ENST00000362700 106 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 SNORA7.1-201ENST00000363750 139 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 SNORD38.2-201ENST00000384470 69 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 Y_RNA.620-201ENST00000411009 88 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 RNU7-156P-201ENST00000517214 74 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 AC013244.2-201ENST00000603396 103 ntBASIC1.1□□□□□ -2.23
HOXA4Q00056 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
HOXA4Q00056 MIR100-201ENST00000385259 80 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 RNU6-1275P-201ENST00000391087 107 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 Y_RNA.609-201ENST00000410669 89 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 SNRPGP12-201ENST00000449481 213 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 MIR6082-201ENST00000613604 109 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 MIR7974-201ENST00000615835 79 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 MIR8066-201ENST00000617280 78 ntBASIC1.09□□□□□ -2.23
HOXA4Q00056 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
HOXA4Q00056 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
HOXA4Q00056 MIR1-1-201ENST00000362147 71 ntBASIC1.08□□□□□ -2.24
HOXA4Q00056 RPS29P23-201ENST00000458635 123 ntBASIC1.08□□□□□ -2.24
HOXA4Q00056 RNU7-85P-201ENST00000458851 63 ntBASIC1.08□□□□□ -2.24
HOXA4Q00056 RNU6-850P-201ENST00000516934 103 ntBASIC1.08□□□□□ -2.24
HOXA4Q00056 MIR4804-201ENST00000581683 73 ntBASIC1.08□□□□□ -2.24
HOXA4Q00056 AL157834.3-201ENST00000615543 103 ntBASIC1.08□□□□□ -2.24
HOXA4Q00056 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.08□□□□□ -2.24
HOXA4Q00056 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
HOXA4Q00056 Y_RNA.4-201ENST00000362333 112 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNU4-58P-201ENST00000363192 141 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNU6-1125P-201ENST00000363601 107 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNY1P1-201ENST00000364372 112 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNU6-979P-201ENST00000383896 107 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 MIR19B1-201ENST00000384829 87 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 SNORA40.6-201ENST00000391153 128 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 MIR938-201ENST00000401216 83 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNU7-56P-201ENST00000458744 62 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 SNORD124-201ENST00000459577 104 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 RNU6-977P-201ENST00000516411 103 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 MIR4439-201ENST00000583746 80 ntBASIC1.07□□□□□ -2.24
HOXA4Q00056 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
HOXA4Q00056 Y_RNA.42-201ENST00000362660 108 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms