Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 RNU6-919P-201ENST00000516731 104 ntBASIC0.88□□□□□ -2.27
RAE1P78406 RNU6-448P-201ENST00000517052 107 ntBASIC0.88□□□□□ -2.27
RAE1P78406 AL353765.1-201ENST00000605514 183 ntBASIC0.88□□□□□ -2.27
RAE1P78406 RNY3P2-201ENST00000362918 102 ntBASIC0.87□□□□□ -2.27
RAE1P78406 SNORD38.1-201ENST00000363863 68 ntBASIC0.87□□□□□ -2.27
RAE1P78406 SNORA25.9-201ENST00000365087 128 ntBASIC0.87□□□□□ -2.27
RAE1P78406 RNU6-44P-201ENST00000384045 107 ntBASIC0.87□□□□□ -2.27
RAE1P78406 MIR577-201ENST00000385196 96 ntBASIC0.87□□□□□ -2.27
RAE1P78406 SNORD99-201ENST00000408612 74 ntBASIC0.87□□□□□ -2.27
RAE1P78406 AL035461.1-201ENST00000421490 332 ntBASIC0.87□□□□□ -2.27
RAE1P78406 AL442128.1-201ENST00000615151 90 ntBASIC0.87□□□□□ -2.27
RAE1P78406 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
RAE1P78406 SNORA22-201ENST00000383907 134 ntBASIC0.86□□□□□ -2.27
RAE1P78406 SNRPGP12-201ENST00000449481 213 ntBASIC0.86□□□□□ -2.27
RAE1P78406 Y_RNA.697-201ENST00000516776 113 ntBASIC0.86□□□□□ -2.27
RAE1P78406 MIR4500-201ENST00000579472 76 ntBASIC0.86□□□□□ -2.27
RAE1P78406 AC013244.2-201ENST00000603396 103 ntBASIC0.86□□□□□ -2.27
RAE1P78406 RNU6-832P-201ENST00000363319 107 ntBASIC0.85□□□□□ -2.27
RAE1P78406 Y_RNA.163-201ENST00000363702 113 ntBASIC0.85□□□□□ -2.27
RAE1P78406 SNORD100-201ENST00000408573 76 ntBASIC0.85□□□□□ -2.27
RAE1P78406 RNA5SP247-201ENST00000411181 105 ntBASIC0.85□□□□□ -2.27
RAE1P78406 AC244098.3-201ENST00000424803 96 ntBASIC0.85□□□□□ -2.27
RAE1P78406 MIR101-2-201ENST00000362195 79 ntBASIC0.84□□□□□ -2.27
RAE1P78406 SNORA63.4-201ENST00000362763 126 ntBASIC0.84□□□□□ -2.27
RAE1P78406 RNU6-106P-201ENST00000384405 107 ntBASIC0.84□□□□□ -2.27
RAE1P78406 Y_RNA.536-201ENST00000384621 113 ntBASIC0.84□□□□□ -2.27
RAE1P78406 RNU6-291P-201ENST00000384720 107 ntBASIC0.84□□□□□ -2.27
RAE1P78406 MIR532-201ENST00000385025 91 ntBASIC0.84□□□□□ -2.27
RAE1P78406 AC002350.1-201ENST00000490759 375 ntBASIC0.84□□□□□ -2.27
RAE1P78406 Y_RNA.56-201ENST00000362798 112 ntBASIC0.83□□□□□ -2.28
RAE1P78406 Y_RNA.78-201ENST00000362970 110 ntBASIC0.83□□□□□ -2.28
RAE1P78406 RNU6-1099P-201ENST00000363533 107 ntBASIC0.83□□□□□ -2.28
RAE1P78406 SNORD114-27-201ENST00000363766 70 ntBASIC0.83□□□□□ -2.28
RAE1P78406 RNU6-755P-201ENST00000364400 103 ntBASIC0.83□□□□□ -2.28
RAE1P78406 Y_RNA.247-201ENST00000364500 92 ntBASIC0.83□□□□□ -2.28
RAE1P78406 RNU6-571P-201ENST00000384128 107 ntBASIC0.83□□□□□ -2.28
RAE1P78406 MIR608-201ENST00000384820 100 ntBASIC0.83□□□□□ -2.28
RAE1P78406 MIR499A-201ENST00000384903 122 ntBASIC0.83□□□□□ -2.28
RAE1P78406 MIR1302-5-201ENST00000408164 150 ntBASIC0.83□□□□□ -2.28
RAE1P78406 RNU6-554P-201ENST00000410466 106 ntBASIC0.83□□□□□ -2.28
RAE1P78406 AC004941.2-201ENST00000427009 228 ntBASIC0.83□□□□□ -2.28
RAE1P78406 AC011195.1-201ENST00000578177 177 ntBASIC0.83□□□□□ -2.28
RAE1P78406 MIR548H5-201ENST00000580314 60 ntBASIC0.83□□□□□ -2.28
RAE1P78406 AC096720.1-201ENST00000604441 183 ntBASIC0.83□□□□□ -2.28
RAE1P78406 RNU7-10P-201ENST00000607194 63 ntBASIC0.83□□□□□ -2.28
RAE1P78406 uc_338.28-201ENST00000612082 187 ntBASIC0.83□□□□□ -2.28
RAE1P78406 MIR8070-201ENST00000616510 88 ntBASIC0.83□□□□□ -2.28
RAE1P78406 Y_RNA.81-201ENST00000362997 102 ntBASIC0.82□□□□□ -2.28
RAE1P78406 Y_RNA.174-201ENST00000363781 105 ntBASIC0.82□□□□□ -2.28
RAE1P78406 RNU4-45P-201ENST00000365469 141 ntBASIC0.82□□□□□ -2.28
RAE1P78406 RNU6-535P-201ENST00000384722 107 ntBASIC0.82□□□□□ -2.28
RAE1P78406 AC141557.1-201ENST00000540982 400 ntBASIC0.82□□□□□ -2.28
RAE1P78406 MIR3612-201ENST00000579753 87 ntBASIC0.82□□□□□ -2.28
RAE1P78406 MIR3973-201ENST00000579824 107 ntBASIC0.82□□□□□ -2.28
RAE1P78406 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.82□□□□□ -2.28
RAE1P78406 MIR6767-201ENST00000637302 66 ntBASIC0.82□□□□□ -2.28
RAE1P78406 Y_RNA.10-201ENST00000362371 110 ntBASIC0.81□□□□□ -2.28
RAE1P78406 RNU4-36P-201ENST00000364294 144 ntBASIC0.81□□□□□ -2.28
RAE1P78406 MIR548G-201ENST00000408442 89 ntBASIC0.81□□□□□ -2.28
RAE1P78406 BX276092.1-201ENST00000427368 251 ntBASIC0.81□□□□□ -2.28
RAE1P78406 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.81□□□□□ -2.28
RAE1P78406 MTND5P40-201ENST00000559945 246 ntBASIC0.81□□□□□ -2.28
RAE1P78406 MIR4698-201ENST00000577795 80 ntBASIC0.81□□□□□ -2.28
RAE1P78406 MIR3613-201ENST00000579844 87 ntBASIC0.81□□□□□ -2.28
RAE1P78406 uc_338.16-201ENST00000621804 95 ntBASIC0.81□□□□□ -2.28
RAE1P78406 Y_RNA.32-201ENST00000362589 110 ntBASIC0.8□□□□□ -2.28
RAE1P78406 RNU6-170P-201ENST00000362832 104 ntBASIC0.8□□□□□ -2.28
RAE1P78406 MIR1287-201ENST00000408492 90 ntBASIC0.8□□□□□ -2.28
RAE1P78406 SNORA19.1-201ENST00000410656 129 ntBASIC0.8□□□□□ -2.28
RAE1P78406 MIR373-201ENST00000362273 69 ntBASIC0.79□□□□□ -2.28
RAE1P78406 Y_RNA.226-201ENST00000364337 114 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNU6-1187P-201ENST00000364771 110 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNA5SP117-201ENST00000365294 118 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
RAE1P78406 SPINT5P-201ENST00000448174 155 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNU6-904P-201ENST00000516206 101 ntBASIC0.79□□□□□ -2.28
RAE1P78406 ACA64.5-201ENST00000516207 127 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNU6-850P-201ENST00000516934 103 ntBASIC0.79□□□□□ -2.28
RAE1P78406 AC211469.2-201ENST00000605461 205 ntBASIC0.79□□□□□ -2.28
RAE1P78406 RNU6-90P-201ENST00000606352 106 ntBASIC0.79□□□□□ -2.28
RAE1P78406 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
RAE1P78406 MIR96-201ENST00000362288 78 ntBASIC0.78□□□□□ -2.28
RAE1P78406 Y_RNA.173-201ENST00000363776 113 ntBASIC0.78□□□□□ -2.28
RAE1P78406 SNORD114-2-201ENST00000363953 78 ntBASIC0.78□□□□□ -2.28
RAE1P78406 Y_RNA.191-201ENST00000363972 113 ntBASIC0.78□□□□□ -2.28
RAE1P78406 SNORD45B-201ENST00000364617 72 ntBASIC0.78□□□□□ -2.28
RAE1P78406 RNU6-1113P-201ENST00000384348 107 ntBASIC0.78□□□□□ -2.28
RAE1P78406 RPL39P28-201ENST00000465655 155 ntBASIC0.78□□□□□ -2.28
RAE1P78406 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.78□□□□□ -2.28
RAE1P78406 Y_RNA.659-201ENST00000515994 113 ntBASIC0.78□□□□□ -2.28
RAE1P78406 SNORA31.14-201ENST00000516728 116 ntBASIC0.78□□□□□ -2.28
RAE1P78406 RNU6-135P-201ENST00000516769 101 ntBASIC0.78□□□□□ -2.28
RAE1P78406 RNA5SP102-201ENST00000516865 106 ntBASIC0.78□□□□□ -2.28
RAE1P78406 MIR6857-201ENST00000613267 93 ntBASIC0.78□□□□□ -2.28
RAE1P78406 MIR6504-201ENST00000613520 61 ntBASIC0.78□□□□□ -2.28
RAE1P78406 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.78□□□□□ -2.28
RAE1P78406 MIR18A-201ENST00000362310 71 ntBASIC0.77□□□□□ -2.29
RAE1P78406 Y_RNA.224-201ENST00000364308 111 ntBASIC0.77□□□□□ -2.29
RAE1P78406 MIR635-201ENST00000384830 98 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 195 ms