Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR3612-201ENST00000579753 87 ntBASIC0.74□□□□□ -2.29
HDAC4P56524 SNORD115-35-201ENST00000365122 82 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 Y_RNA.344-201ENST00000365381 112 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 RNU6-716P-201ENST00000365621 103 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 Y_RNA.448-201ENST00000384185 108 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 MIR548D2-201ENST00000384955 97 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 RNU6-733P-201ENST00000410759 104 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 RNU6-765P-201ENST00000516916 99 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 RNU6-448P-201ENST00000517052 107 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 MTND5P34-201ENST00000568888 325 ntBASIC0.73□□□□□ -2.29
HDAC4P56524 RNY1P2-201ENST00000364820 117 ntBASIC0.72□□□□□ -2.29
HDAC4P56524 SNORA72.6-201ENST00000384520 129 ntBASIC0.72□□□□□ -2.29
HDAC4P56524 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.72□□□□□ -2.29
HDAC4P56524 MIR18A-201ENST00000362310 71 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 Y_RNA.119-201ENST00000363301 96 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 Y_RNA.127-201ENST00000363386 109 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 Y_RNA.261-201ENST00000364631 102 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 RNA5SP222-201ENST00000411039 105 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 AL353813.1-201ENST00000440700 253 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 RNU7-48P-201ENST00000458875 63 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 SNORD33.1-201ENST00000516213 88 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 MIR6835-201ENST00000621552 64 ntBASIC0.71□□□□□ -2.3
HDAC4P56524 Y_RNA.346-201ENST00000365385 112 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 RNU4-45P-201ENST00000365469 141 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 RNU6-291P-201ENST00000384720 107 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 RNU6-1333P-201ENST00000516162 93 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.7□□□□□ -2.3
HDAC4P56524 AP003327.1-201ENST00000529684 127 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 MIR376B-201ENST00000614515 100 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 AL365222.1-201ENST00000614661 98 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 uc_338.16-201ENST00000621804 95 ntBASIC0.7□□□□□ -2.3
HDAC4P56524 RNA5SP347-201ENST00000362445 119 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 Y_RNA.32-201ENST00000362589 110 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 Y_RNA.328-201ENST00000365208 113 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 Y_RNA.353-201ENST00000365440 108 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 RNU6-521P-201ENST00000516663 105 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 MIR4711-201ENST00000578274 70 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 AL035470.1-201ENST00000622571 220 ntBASIC0.69□□□□□ -2.3
HDAC4P56524 SNORD113-1-201ENST00000365321 69 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 Y_RNA.362-201ENST00000365518 110 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 Y_RNA.536-201ENST00000384621 113 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 Y_RNA.563-201ENST00000384707 108 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 MIR34C-201ENST00000384831 77 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 MIR508-201ENST00000384857 115 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 RNU6-1194P-201ENST00000516208 104 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 SNORA31.14-201ENST00000516728 116 ntBASIC0.68□□□□□ -2.3
HDAC4P56524 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
HDAC4P56524 RNU4-58P-201ENST00000363192 141 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 RNY4P6-201ENST00000363667 96 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 RNA5SP245-201ENST00000364239 121 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 Y_RNA.549-201ENST00000384657 102 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 MIR759-201ENST00000390224 91 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 RNA5SP476-201ENST00000516613 103 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 DEFB131E-201ENST00000532329 154 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.67□□□□□ -2.3
HDAC4P56524 RNU6-363P-201ENST00000362895 105 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 Y_RNA.98-201ENST00000363109 102 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 SNORA36.2-201ENST00000384004 127 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 RNU6-429P-201ENST00000384582 108 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 RNU6-679P-201ENST00000391003 106 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 Y_RNA.649-201ENST00000459077 103 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 Y_RNA.697-201ENST00000516776 113 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.66□□□□□ -2.3
HDAC4P56524 AP001362.1-201ENST00000625165 124 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 AC132825.6-201ENST00000638861 357 ntBASIC0.66□□□□□ -2.3
HDAC4P56524 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.66□□□□□ -2.3
HDAC4P56524 RNU4-67P-201ENST00000364569 141 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 MIR644A-201ENST00000385262 94 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 RNA5SP193-201ENST00000410353 107 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 HAR1A.1-201ENST00000459583 118 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 RNU6-1006P-201ENST00000516998 103 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 MIR4679-2-201ENST00000578358 77 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 MIR3678-201ENST00000578455 94 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 U6.95-201ENST00000636931 70 ntBASIC0.65□□□□□ -2.31
HDAC4P56524 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
HDAC4P56524 SNORA63.5-201ENST00000363548 123 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 RNA5SP117-201ENST00000365294 118 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 RNU6-22P-201ENST00000384355 107 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 RNU6-535P-201ENST00000384722 107 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 MIR548A1-201ENST00000385041 97 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 MIR140-201ENST00000385282 100 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 MIR1197-201ENST00000408818 88 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 AC007012.1-201ENST00000567192 175 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 MIR4500-201ENST00000579472 76 ntBASIC0.64□□□□□ -2.31
HDAC4P56524 RNU6-865P-201ENST00000364772 107 ntBASIC0.63□□□□□ -2.31
HDAC4P56524 Y_RNA.360-201ENST00000365512 102 ntBASIC0.63□□□□□ -2.31
HDAC4P56524 SNORA7.5-201ENST00000410672 110 ntBASIC0.63□□□□□ -2.31
HDAC4P56524 AC008267.6-201ENST00000441664 139 ntBASIC0.63□□□□□ -2.31
HDAC4P56524 Y_RNA.247-201ENST00000364500 92 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 RNU6-35P-201ENST00000384530 107 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 RNU6-1168P-201ENST00000390831 104 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 BX276092.1-201ENST00000427368 251 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 AC243829.3-201ENST00000622177 108 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 MIR5087-201ENST00000635826 76 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 AL162726.3-218ENST00000636401 95 ntBASIC0.62□□□□□ -2.31
HDAC4P56524 RNU6-1313P-201ENST00000362622 102 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 Y_RNA.56-201ENST00000362798 112 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 SNORD18A-201ENST00000363753 72 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 RNU6-816P-201ENST00000390914 107 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms