Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.61□□□□□ -2.15
LIG3P49916 MIR4676-201ENST00000583078 72 ntBASIC1.61□□□□□ -2.15
LIG3P49916 SNORD116-22-201ENST00000384430 92 ntBASIC1.6□□□□□ -2.15
LIG3P49916 AC108667.1-201ENST00000428618 249 ntBASIC1.6□□□□□ -2.15
LIG3P49916 RNU7-156P-201ENST00000517214 74 ntBASIC1.6□□□□□ -2.15
LIG3P49916 MIR4781-201ENST00000585250 76 ntBASIC1.6□□□□□ -2.15
LIG3P49916 MIR7974-201ENST00000615835 79 ntBASIC1.6□□□□□ -2.15
LIG3P49916 AC025521.1-201ENST00000621624 286 ntBASIC1.6□□□□□ -2.15
LIG3P49916 Y_RNA.17-201ENST00000362433 111 ntBASIC1.59□□□□□ -2.15
LIG3P49916 RNA5SP327-201ENST00000362494 101 ntBASIC1.59□□□□□ -2.15
LIG3P49916 RNU6-364P-201ENST00000384387 107 ntBASIC1.59□□□□□ -2.15
LIG3P49916 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
LIG3P49916 SNORA26.2-201ENST00000390922 122 ntBASIC1.59□□□□□ -2.15
LIG3P49916 SNORA67.5-201ENST00000391036 107 ntBASIC1.59□□□□□ -2.15
LIG3P49916 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.59□□□□□ -2.15
LIG3P49916 MIR938-201ENST00000401216 83 ntBASIC1.59□□□□□ -2.15
LIG3P49916 AC013244.2-201ENST00000603396 103 ntBASIC1.59□□□□□ -2.15
LIG3P49916 RNU7-10P-201ENST00000607194 63 ntBASIC1.59□□□□□ -2.15
LIG3P49916 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
LIG3P49916 MIR1-1-201ENST00000362147 71 ntBASIC1.58□□□□□ -2.16
LIG3P49916 MIR100-201ENST00000385259 80 ntBASIC1.58□□□□□ -2.16
LIG3P49916 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.58□□□□□ -2.16
LIG3P49916 AC002429.1-201ENST00000437672 148 ntBASIC1.58□□□□□ -2.16
LIG3P49916 SNORD53B-201ENST00000577887 78 ntBASIC1.58□□□□□ -2.16
LIG3P49916 MIR4303-201ENST00000581299 66 ntBASIC1.58□□□□□ -2.16
LIG3P49916 Y_RNA.42-201ENST00000362660 108 ntBASIC1.57□□□□□ -2.16
LIG3P49916 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
LIG3P49916 SNORD100-201ENST00000408573 76 ntBASIC1.57□□□□□ -2.16
LIG3P49916 Y_RNA.593-201ENST00000410292 98 ntBASIC1.57□□□□□ -2.16
LIG3P49916 AC023790.1-201ENST00000482174 347 ntBASIC1.57□□□□□ -2.16
LIG3P49916 RNU6-977P-201ENST00000516411 103 ntBASIC1.57□□□□□ -2.16
LIG3P49916 MIR548H5-201ENST00000580314 60 ntBASIC1.57□□□□□ -2.16
LIG3P49916 AC027335.2-201ENST00000624030 375 ntBASIC1.57□□□□□ -2.16
LIG3P49916 Y_RNA.338-201ENST00000365320 114 ntBASIC1.56□□□□□ -2.16
LIG3P49916 RNY4P29-201ENST00000410801 97 ntBASIC1.56□□□□□ -2.16
LIG3P49916 RNA5SP61-201ENST00000516453 100 ntBASIC1.56□□□□□ -2.16
LIG3P49916 SNORD92-201ENST00000585078 85 ntBASIC1.56□□□□□ -2.16
LIG3P49916 BX248123.2-201ENST00000606318 124 ntBASIC1.56□□□□□ -2.16
LIG3P49916 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
LIG3P49916 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
LIG3P49916 RNU1-42P-201ENST00000364033 160 ntBASIC1.55□□□□□ -2.16
LIG3P49916 RNU6-820P-201ENST00000384273 107 ntBASIC1.55□□□□□ -2.16
LIG3P49916 RNU4-62P-201ENST00000410125 130 ntBASIC1.55□□□□□ -2.16
LIG3P49916 RNU6-955P-201ENST00000410497 104 ntBASIC1.55□□□□□ -2.16
LIG3P49916 Y_RNA.609-201ENST00000410669 89 ntBASIC1.55□□□□□ -2.16
LIG3P49916 Y_RNA.676-201ENST00000516393 96 ntBASIC1.55□□□□□ -2.16
LIG3P49916 Y_RNA.697-201ENST00000516776 113 ntBASIC1.55□□□□□ -2.16
LIG3P49916 MIR4804-201ENST00000581683 73 ntBASIC1.55□□□□□ -2.16
LIG3P49916 MIR4668-201ENST00000582284 70 ntBASIC1.55□□□□□ -2.16
LIG3P49916 AL645939.4-201ENST00000604495 135 ntBASIC1.55□□□□□ -2.16
LIG3P49916 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
LIG3P49916 MIR494-201ENST00000349529 81 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RNU6-369P-201ENST00000362515 102 ntBASIC1.54□□□□□ -2.16
LIG3P49916 Y_RNA.56-201ENST00000362798 112 ntBASIC1.54□□□□□ -2.16
LIG3P49916 MIR635-201ENST00000384830 98 ntBASIC1.54□□□□□ -2.16
LIG3P49916 SNORA67.6-201ENST00000391093 99 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RNU6-1254P-201ENST00000391266 104 ntBASIC1.54□□□□□ -2.16
LIG3P49916 MIR1827-201ENST00000408549 66 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RNU6-402P-201ENST00000410678 103 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RNU7-102P-201ENST00000458948 62 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RN7SKP12-201ENST00000516275 143 ntBASIC1.54□□□□□ -2.16
LIG3P49916 AC062037.1-201ENST00000605302 128 ntBASIC1.54□□□□□ -2.16
LIG3P49916 IGLL4P-201ENST00000614590 133 ntBASIC1.54□□□□□ -2.16
LIG3P49916 RNY1P1-201ENST00000364372 112 ntBASIC1.53□□□□□ -2.16
LIG3P49916 SNORD26-201ENST00000384147 75 ntBASIC1.53□□□□□ -2.16
LIG3P49916 RNY1P4-201ENST00000384595 115 ntBASIC1.53□□□□□ -2.16
LIG3P49916 Y_RNA.536-201ENST00000384621 113 ntBASIC1.53□□□□□ -2.16
LIG3P49916 MIR516A2-201ENST00000384888 90 ntBASIC1.53□□□□□ -2.16
LIG3P49916 MIR516A1-201ENST00000385033 90 ntBASIC1.53□□□□□ -2.16
LIG3P49916 MIR517C-201ENST00000385103 95 ntBASIC1.53□□□□□ -2.16
LIG3P49916 RNU1-119P-201ENST00000391122 165 ntBASIC1.53□□□□□ -2.16
LIG3P49916 RNU6-243P-201ENST00000391140 107 ntBASIC1.53□□□□□ -2.16
LIG3P49916 MIR1323-201ENST00000408090 73 ntBASIC1.53□□□□□ -2.16
LIG3P49916 SNORD63B-201ENST00000411005 70 ntBASIC1.53□□□□□ -2.16
LIG3P49916 AL512598.1-201ENST00000610158 273 ntBASIC1.53□□□□□ -2.16
LIG3P49916 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
LIG3P49916 MIR378A-201ENST00000362177 66 ntBASIC1.52□□□□□ -2.17
LIG3P49916 RNU6-675P-201ENST00000384236 104 ntBASIC1.52□□□□□ -2.17
LIG3P49916 RNU6-519P-201ENST00000410590 108 ntBASIC1.52□□□□□ -2.17
LIG3P49916 AP003327.1-201ENST00000529684 127 ntBASIC1.52□□□□□ -2.17
LIG3P49916 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.52□□□□□ -2.17
LIG3P49916 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.52□□□□□ -2.17
LIG3P49916 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
LIG3P49916 MIR520F-201ENST00000384824 87 ntBASIC1.51□□□□□ -2.17
LIG3P49916 Y_RNA.620-201ENST00000411009 88 ntBASIC1.51□□□□□ -2.17
LIG3P49916 AL161932.1-201ENST00000437408 146 ntBASIC1.51□□□□□ -2.17
LIG3P49916 RPS29P23-201ENST00000458635 123 ntBASIC1.51□□□□□ -2.17
LIG3P49916 Y_RNA.648-201ENST00000459455 110 ntBASIC1.51□□□□□ -2.17
LIG3P49916 SNORA31.24-201ENST00000517232 57 ntBASIC1.51□□□□□ -2.17
LIG3P49916 RNU6-219P-201ENST00000364728 107 ntBASIC1.5□□□□□ -2.17
LIG3P49916 MIR19B1-201ENST00000384829 87 ntBASIC1.5□□□□□ -2.17
LIG3P49916 MIR1304-201ENST00000408243 91 ntBASIC1.5□□□□□ -2.17
LIG3P49916 FABP5P4-201ENST00000437203 171 ntBASIC1.5□□□□□ -2.17
LIG3P49916 RNU7-56P-201ENST00000458744 62 ntBASIC1.5□□□□□ -2.17
LIG3P49916 TRAJ51-201ENST00000504127 63 ntBASIC1.5□□□□□ -2.17
LIG3P49916 AL136317.1-201ENST00000612653 226 ntBASIC1.5□□□□□ -2.17
LIG3P49916 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
LIG3P49916 SNORD36A-201ENST00000362874 73 ntBASIC1.49□□□□□ -2.17
LIG3P49916 RNY1P10-201ENST00000363268 113 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms