Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-1260P-201ENST00000362944 107 ntBASIC2.13□□□□□ -2.07
MSX1P28360 Y_RNA.239-201ENST00000364444 113 ntBASIC2.13□□□□□ -2.07
MSX1P28360 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
MSX1P28360 snoU13.17-201ENST00000458802 104 ntBASIC2.13□□□□□ -2.07
MSX1P28360 Y_RNA.676-201ENST00000516393 96 ntBASIC2.13□□□□□ -2.07
MSX1P28360 MIR6082-201ENST00000613604 109 ntBASIC2.13□□□□□ -2.07
MSX1P28360 MIR664A-201ENST00000626086 82 ntBASIC2.13□□□□□ -2.07
MSX1P28360 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.12□□□□□ -2.07
MSX1P28360 AL359851.1-201ENST00000569460 4997 ntBASIC2.12□□□□□ -2.07
MSX1P28360 Y_RNA.13-201ENST00000362403 112 ntBASIC2.12□□□□□ -2.07
MSX1P28360 SNORA16B-201ENST00000364674 135 ntBASIC2.12□□□□□ -2.07
MSX1P28360 SNORA67.3-201ENST00000384366 140 ntBASIC2.12□□□□□ -2.07
MSX1P28360 RNU6-482P-201ENST00000391068 107 ntBASIC2.12□□□□□ -2.07
MSX1P28360 MIR1257-201ENST00000408490 117 ntBASIC2.12□□□□□ -2.07
MSX1P28360 RPS27P16-201ENST00000425758 201 ntBASIC2.12□□□□□ -2.07
MSX1P28360 AC092628.1-201ENST00000436250 252 ntBASIC2.12□□□□□ -2.07
MSX1P28360 RNU6-548P-201ENST00000517083 115 ntBASIC2.12□□□□□ -2.07
MSX1P28360 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.12□□□□□ -2.07
MSX1P28360 AC046143.2-201ENST00000609789 160 ntBASIC2.12□□□□□ -2.07
MSX1P28360 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.12□□□□□ -2.07
MSX1P28360 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.12□□□□□ -2.07
MSX1P28360 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
MSX1P28360 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
MSX1P28360 Y_RNA.42-201ENST00000362660 108 ntBASIC2.11□□□□□ -2.07
MSX1P28360 RNU6-649P-201ENST00000384463 107 ntBASIC2.11□□□□□ -2.07
MSX1P28360 Y_RNA.596-201ENST00000410462 109 ntBASIC2.11□□□□□ -2.07
MSX1P28360 AL606490.4-201ENST00000423117 127 ntBASIC2.11□□□□□ -2.07
MSX1P28360 MIR514B-201ENST00000516774 80 ntBASIC2.11□□□□□ -2.07
MSX1P28360 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
MSX1P28360 Y_RNA.207-201ENST00000364142 106 ntBASIC2.1□□□□□ -2.07
MSX1P28360 RNY4P3-201ENST00000365254 95 ntBASIC2.1□□□□□ -2.07
MSX1P28360 Y_RNA.340-201ENST00000365330 92 ntBASIC2.1□□□□□ -2.07
MSX1P28360 HMGN2P38-201ENST00000423806 265 ntBASIC2.1□□□□□ -2.07
MSX1P28360 MIR6766-201ENST00000622641 72 ntBASIC2.1□□□□□ -2.07
MSX1P28360 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
MSX1P28360 MIR302D-201ENST00000362275 68 ntBASIC2.09□□□□□ -2.07
MSX1P28360 Y_RNA.36-201ENST00000362602 112 ntBASIC2.09□□□□□ -2.07
MSX1P28360 SNORD114-1-201ENST00000362705 72 ntBASIC2.09□□□□□ -2.07
MSX1P28360 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.09□□□□□ -2.07
MSX1P28360 snoU13.9-201ENST00000458927 103 ntBASIC2.09□□□□□ -2.07
MSX1P28360 snoU13.21-201ENST00000459368 105 ntBASIC2.09□□□□□ -2.07
MSX1P28360 RNU6-765P-201ENST00000516916 99 ntBASIC2.09□□□□□ -2.07
MSX1P28360 MIR4287-201ENST00000579398 78 ntBASIC2.09□□□□□ -2.07
MSX1P28360 MIR4696-201ENST00000581431 70 ntBASIC2.09□□□□□ -2.07
MSX1P28360 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
MSX1P28360 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
MSX1P28360 RNU6-664P-201ENST00000362381 107 ntBASIC2.08□□□□□ -2.08
MSX1P28360 SNORD1A-201ENST00000364968 72 ntBASIC2.08□□□□□ -2.08
MSX1P28360 SNORD101-201ENST00000384027 73 ntBASIC2.08□□□□□ -2.08
MSX1P28360 SNORA8.1-201ENST00000384250 140 ntBASIC2.08□□□□□ -2.08
MSX1P28360 MIR942-201ENST00000401111 86 ntBASIC2.08□□□□□ -2.08
MSX1P28360 Y_RNA.697-201ENST00000516776 113 ntBASIC2.08□□□□□ -2.08
MSX1P28360 MIR3664-201ENST00000579074 99 ntBASIC2.08□□□□□ -2.08
MSX1P28360 MIR6873-201ENST00000622788 63 ntBASIC2.08□□□□□ -2.08
MSX1P28360 RNU6-1241P-201ENST00000384536 107 ntBASIC2.07□□□□□ -2.08
MSX1P28360 RNU6-1054P-201ENST00000411293 104 ntBASIC2.07□□□□□ -2.08
MSX1P28360 SNORD83.1-201ENST00000411362 77 ntBASIC2.07□□□□□ -2.08
MSX1P28360 AC097635.1-201ENST00000450678 155 ntBASIC2.07□□□□□ -2.08
MSX1P28360 AC079140.2-201ENST00000506193 142 ntBASIC2.07□□□□□ -2.08
MSX1P28360 U6.100-201ENST00000636230 99 ntBASIC2.07□□□□□ -2.08
MSX1P28360 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.06□□□□□ -2.08
MSX1P28360 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
MSX1P28360 SNORD33-201ENST00000362761 85 ntBASIC2.06□□□□□ -2.08
MSX1P28360 RNU6-340P-201ENST00000364005 107 ntBASIC2.06□□□□□ -2.08
MSX1P28360 RNU6-1065P-201ENST00000384513 106 ntBASIC2.06□□□□□ -2.08
MSX1P28360 RNU6-540P-201ENST00000384622 101 ntBASIC2.06□□□□□ -2.08
MSX1P28360 AL603825.1-201ENST00000438481 80 ntBASIC2.06□□□□□ -2.08
MSX1P28360 RNA5SP200-201ENST00000516360 103 ntBASIC2.06□□□□□ -2.08
MSX1P28360 MIR4299-201ENST00000577899 72 ntBASIC2.06□□□□□ -2.08
MSX1P28360 MTRNR2L2-201ENST00000604882 87 ntBASIC2.06□□□□□ -2.08
MSX1P28360 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.06□□□□□ -2.08
MSX1P28360 AL353997.5-201ENST00000618886 171 ntBASIC2.06□□□□□ -2.08
MSX1P28360 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.06□□□□□ -2.08
MSX1P28360 MIR6132-201ENST00000622083 109 ntBASIC2.06□□□□□ -2.08
MSX1P28360 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.06□□□□□ -2.08
MSX1P28360 ZNF209P-201ENST00000593450 2304 ntBASIC2.05□□□□□ -2.08
MSX1P28360 SNORD113.3-201ENST00000364630 78 ntBASIC2.05□□□□□ -2.08
MSX1P28360 RNU6-934P-201ENST00000365154 107 ntBASIC2.05□□□□□ -2.08
MSX1P28360 Y_RNA.371-201ENST00000365591 113 ntBASIC2.05□□□□□ -2.08
MSX1P28360 Y_RNA.386-201ENST00000383913 105 ntBASIC2.05□□□□□ -2.08
MSX1P28360 RNU4-52P-201ENST00000384209 138 ntBASIC2.05□□□□□ -2.08
MSX1P28360 RNU6-154P-201ENST00000384306 106 ntBASIC2.05□□□□□ -2.08
MSX1P28360 RNU6-291P-201ENST00000384720 107 ntBASIC2.05□□□□□ -2.08
MSX1P28360 MIR154-201ENST00000385243 84 ntBASIC2.05□□□□□ -2.08
MSX1P28360 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
MSX1P28360 SNORA48.3-201ENST00000391081 134 ntBASIC2.05□□□□□ -2.08
MSX1P28360 SNORD30.1-201ENST00000391309 70 ntBASIC2.05□□□□□ -2.08
MSX1P28360 MIR1265-201ENST00000408444 86 ntBASIC2.05□□□□□ -2.08
MSX1P28360 RNU2-59P-201ENST00000410482 191 ntBASIC2.05□□□□□ -2.08
MSX1P28360 AC019176.1-201ENST00000518519 225 ntBASIC2.05□□□□□ -2.08
MSX1P28360 AC138907.6-201ENST00000568401 126 ntBASIC2.05□□□□□ -2.08
MSX1P28360 AC138869.1-201ENST00000568623 124 ntBASIC2.05□□□□□ -2.08
MSX1P28360 AC103810.8-201ENST00000607347 118 ntBASIC2.05□□□□□ -2.08
MSX1P28360 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.05□□□□□ -2.08
MSX1P28360 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
MSX1P28360 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
MSX1P28360 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
MSX1P28360 MIRLET7G-201ENST00000362280 84 ntBASIC2.04□□□□□ -2.08
MSX1P28360 RNU6-330P-201ENST00000363015 107 ntBASIC2.04□□□□□ -2.08
MSX1P28360 MIR125B2-201ENST00000385128 89 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms