Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AC016907.1-201ENST00000419483 435 ntBASIC-1.18□□□□□ -2.6
SGCEO43556 RNU7-106P-201ENST00000459514 67 ntBASIC-1.18□□□□□ -2.6
SGCEO43556 MIR5591-201ENST00000578248 65 ntBASIC-1.18□□□□□ -2.6
SGCEO43556 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.18□□□□□ -2.6
SGCEO43556 AC084781.2-201ENST00000615568 161 ntBASIC-1.18□□□□□ -2.6
SGCEO43556 MIR1246-201ENST00000636535 73 ntBASIC-1.18□□□□□ -2.6
SGCEO43556 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 SNORD74.6-201ENST00000364796 70 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 RNU6-211P-201ENST00000384047 107 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 MIR889-201ENST00000401280 79 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 Z83846.1-201ENST00000446798 265 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 RNU6-976P-201ENST00000516086 111 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 RNU6-287P-201ENST00000516230 98 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.19□□□□□ -2.6
SGCEO43556 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 SNORD115-35-201ENST00000365122 82 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 RNU6-571P-201ENST00000384128 107 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 RNU6-905P-201ENST00000384434 107 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 MIR1285-2-201ENST00000408311 88 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 RNU7-152P-201ENST00000458982 64 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 AC082651.2-201ENST00000496833 166 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.2□□□□□ -2.6
SGCEO43556 AC138207.3-201ENST00000585289 166 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 AP001362.1-201ENST00000625165 124 ntBASIC-1.2□□□□□ -2.6
SGCEO43556 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 MIR206-201ENST00000384872 86 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 MIR1302-11-201ENST00000408051 138 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 MIR1302-9-201ENST00000408365 138 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 MIR1302-10-201ENST00000408734 138 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 AC107027.2-201ENST00000512197 115 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 RNU6-479P-201ENST00000516348 105 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 snoU83B.1-201ENST00000517136 88 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 MIR1302-2-201ENST00000607096 138 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 AC090574.1-201ENST00000623186 233 ntBASIC-1.21□□□□□ -2.6
SGCEO43556 UBE2WP1-201ENST00000362030 340 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 SNORD2-201ENST00000459163 69 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.22□□□□□ -2.6
SGCEO43556 MIR4520-1-201ENST00000582609 70 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 MIR6854-201ENST00000614935 69 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 AC073869.6-201ENST00000640656 341 ntBASIC-1.22□□□□□ -2.6
SGCEO43556 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 RNU6-728P-201ENST00000365375 104 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 RNU6-540P-201ENST00000384622 101 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 RNU6-476P-201ENST00000384726 107 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 MT-TL1-201ENST00000386347 75 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 SNX3P1X-201ENST00000414887 175 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 AC132825.6-201ENST00000638861 357 ntBASIC-1.23□□□□□ -2.61
SGCEO43556 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 MIR624-201ENST00000385217 97 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 RNU6-876P-201ENST00000391295 104 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 SNORD116-25-201ENST00000516517 92 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 RNU6-453P-201ENST00000516819 85 ntBASIC-1.24□□□□□ -2.61
SGCEO43556 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.25□□□□□ -2.61
SGCEO43556 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.25□□□□□ -2.61
SGCEO43556 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.25□□□□□ -2.61
SGCEO43556 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.25□□□□□ -2.61
SGCEO43556 RNU6-472P-201ENST00000384299 107 ntBASIC-1.25□□□□□ -2.61
SGCEO43556 Y_RNA.65-201ENST00000362846 100 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 RNU4-43P-201ENST00000410628 137 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 RNU2-51P-201ENST00000410708 197 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 SERF1AP1-201ENST00000514575 187 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 RNA5SP272-201ENST00000516095 111 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 RNU2-35P-201ENST00000516446 142 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 RNA5SP476-201ENST00000516613 103 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.26□□□□□ -2.61
SGCEO43556 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.26□□□□□ -2.61
SGCEO43556 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.27□□□□□ -2.61
SGCEO43556 RNU6-978P-201ENST00000364371 103 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 Y_RNA.541-201ENST00000384640 113 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 MIR516A2-201ENST00000384888 90 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 MIR516A1-201ENST00000385033 90 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 MIR601-201ENST00000385256 79 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 FGF7P6-202ENST00000451282 293 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 HAR1A.1-201ENST00000459583 118 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 RNU6-561P-201ENST00000516222 102 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 RNU6-277P-201ENST00000516272 106 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 RNU6-850P-201ENST00000516934 103 ntBASIC-1.27□□□□□ -2.61
SGCEO43556 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.28□□□□□ -2.61
SGCEO43556 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.28□□□□□ -2.61
SGCEO43556 MIR582-201ENST00000365731 98 ntBASIC-1.28□□□□□ -2.61
SGCEO43556 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.28□□□□□ -2.61
SGCEO43556 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.28□□□□□ -2.61
SGCEO43556 RNU4-69P-201ENST00000410677 143 ntBASIC-1.28□□□□□ -2.61
SGCEO43556 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.28□□□□□ -2.61
SGCEO43556 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.28□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 193.6 ms