Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU4-36P-201ENST00000364294 144 ntBASIC1.23□□□□□ -2.21
CBX4O00257 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CBX4O00257 RNU6-1201P-201ENST00000384227 107 ntBASIC1.23□□□□□ -2.21
CBX4O00257 RNU6-1113P-201ENST00000384348 107 ntBASIC1.23□□□□□ -2.21
CBX4O00257 RNU1-119P-201ENST00000391122 165 ntBASIC1.23□□□□□ -2.21
CBX4O00257 AL353813.1-201ENST00000440700 253 ntBASIC1.23□□□□□ -2.21
CBX4O00257 SNORA25.16-201ENST00000516741 121 ntBASIC1.23□□□□□ -2.21
CBX4O00257 AC141557.1-201ENST00000540982 400 ntBASIC1.23□□□□□ -2.21
CBX4O00257 AL442128.1-201ENST00000615151 90 ntBASIC1.23□□□□□ -2.21
CBX4O00257 MIR6767-201ENST00000637302 66 ntBASIC1.23□□□□□ -2.21
CBX4O00257 Y_RNA.13-201ENST00000362403 112 ntBASIC1.22□□□□□ -2.21
CBX4O00257 RNU6-755P-201ENST00000364400 103 ntBASIC1.22□□□□□ -2.21
CBX4O00257 RNU6-106P-201ENST00000384405 107 ntBASIC1.22□□□□□ -2.21
CBX4O00257 MIR577-201ENST00000385196 96 ntBASIC1.22□□□□□ -2.21
CBX4O00257 AL031737.1-201ENST00000450125 223 ntBASIC1.22□□□□□ -2.21
CBX4O00257 RNU6-765P-201ENST00000516916 99 ntBASIC1.22□□□□□ -2.21
CBX4O00257 SNORD92-201ENST00000585078 85 ntBASIC1.22□□□□□ -2.21
CBX4O00257 MIR6082-201ENST00000613604 109 ntBASIC1.22□□□□□ -2.21
CBX4O00257 AC022709.1-201ENST00000615967 87 ntBASIC1.22□□□□□ -2.21
CBX4O00257 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.21□□□□□ -2.22
CBX4O00257 Y_RNA.10-201ENST00000362371 110 ntBASIC1.21□□□□□ -2.22
CBX4O00257 SNORA63.4-201ENST00000362763 126 ntBASIC1.21□□□□□ -2.22
CBX4O00257 RNU6-832P-201ENST00000363319 107 ntBASIC1.21□□□□□ -2.22
CBX4O00257 SNORD38.1-201ENST00000363863 68 ntBASIC1.21□□□□□ -2.22
CBX4O00257 Y_RNA.377-201ENST00000365644 108 ntBASIC1.21□□□□□ -2.22
CBX4O00257 RNU6-554P-201ENST00000410466 106 ntBASIC1.21□□□□□ -2.22
CBX4O00257 RNU7-102P-201ENST00000458948 62 ntBASIC1.21□□□□□ -2.22
CBX4O00257 PDCD5P2-201ENST00000507570 312 ntBASIC1.21□□□□□ -2.22
CBX4O00257 RNU6-1194P-201ENST00000516208 104 ntBASIC1.21□□□□□ -2.22
CBX4O00257 RNU6-531P-201ENST00000516694 104 ntBASIC1.21□□□□□ -2.22
CBX4O00257 MIR4500-201ENST00000579472 76 ntBASIC1.21□□□□□ -2.22
CBX4O00257 AC025627.3-201ENST00000582078 182 ntBASIC1.21□□□□□ -2.22
CBX4O00257 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.21□□□□□ -2.22
CBX4O00257 Y_RNA.78-201ENST00000362970 110 ntBASIC1.2□□□□□ -2.22
CBX4O00257 RNU6-1099P-201ENST00000363533 107 ntBASIC1.2□□□□□ -2.22
CBX4O00257 RNU7-56P-201ENST00000458744 62 ntBASIC1.2□□□□□ -2.22
CBX4O00257 UBL5P1-201ENST00000507979 193 ntBASIC1.2□□□□□ -2.22
CBX4O00257 AC090897.1-201ENST00000580909 226 ntBASIC1.2□□□□□ -2.22
CBX4O00257 MIR8066-201ENST00000617280 78 ntBASIC1.2□□□□□ -2.22
CBX4O00257 Y_RNA.42-201ENST00000362660 108 ntBASIC1.19□□□□□ -2.22
CBX4O00257 Y_RNA.81-201ENST00000362997 102 ntBASIC1.19□□□□□ -2.22
CBX4O00257 SNORA51.5-201ENST00000384126 131 ntBASIC1.19□□□□□ -2.22
CBX4O00257 MIR520H-201ENST00000385126 88 ntBASIC1.19□□□□□ -2.22
CBX4O00257 SNORD105-201ENST00000386910 85 ntBASIC1.19□□□□□ -2.22
CBX4O00257 AC004941.2-201ENST00000427009 228 ntBASIC1.19□□□□□ -2.22
CBX4O00257 MTND5P40-201ENST00000559945 246 ntBASIC1.19□□□□□ -2.22
CBX4O00257 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.19□□□□□ -2.22
CBX4O00257 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
CBX4O00257 MIR101-2-201ENST00000362195 79 ntBASIC1.18□□□□□ -2.22
CBX4O00257 RNU6-756P-201ENST00000383997 107 ntBASIC1.18□□□□□ -2.22
CBX4O00257 RNA5SP255-201ENST00000516370 107 ntBASIC1.18□□□□□ -2.22
CBX4O00257 MIR598-201ENST00000384868 97 ntBASIC1.17□□□□□ -2.22
CBX4O00257 SPINT5P-201ENST00000448174 155 ntBASIC1.17□□□□□ -2.22
CBX4O00257 RNU6-90P-201ENST00000606352 106 ntBASIC1.17□□□□□ -2.22
CBX4O00257 HSBP1P2-201ENST00000299671 229 ntBASIC1.16□□□□□ -2.22
CBX4O00257 RNU6-766P-201ENST00000362478 107 ntBASIC1.16□□□□□ -2.22
CBX4O00257 SNORD45B-201ENST00000364617 72 ntBASIC1.16□□□□□ -2.22
CBX4O00257 MIR548J-201ENST00000408833 112 ntBASIC1.16□□□□□ -2.22
CBX4O00257 Y_RNA.659-201ENST00000515994 113 ntBASIC1.16□□□□□ -2.22
CBX4O00257 Y_RNA.697-201ENST00000516776 113 ntBASIC1.16□□□□□ -2.22
CBX4O00257 RNU6-1006P-201ENST00000516998 103 ntBASIC1.16□□□□□ -2.22
CBX4O00257 AP003327.1-201ENST00000529684 127 ntBASIC1.16□□□□□ -2.22
CBX4O00257 AC013244.2-201ENST00000603396 103 ntBASIC1.16□□□□□ -2.22
CBX4O00257 PVT1_3.1-201ENST00000620853 95 ntBASIC1.16□□□□□ -2.22
CBX4O00257 Y_RNA.374-201ENST00000365606 101 ntBASIC1.15□□□□□ -2.23
CBX4O00257 MIR548G-201ENST00000408442 89 ntBASIC1.15□□□□□ -2.23
CBX4O00257 Y_RNA.601-201ENST00000410500 113 ntBASIC1.15□□□□□ -2.23
CBX4O00257 RNU6-904P-201ENST00000516206 101 ntBASIC1.15□□□□□ -2.23
CBX4O00257 MIR4661-201ENST00000582720 75 ntBASIC1.15□□□□□ -2.23
CBX4O00257 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.15□□□□□ -2.23
CBX4O00257 AC008608.1-201ENST00000603910 127 ntBASIC1.15□□□□□ -2.23
CBX4O00257 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.14□□□□□ -2.23
CBX4O00257 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
CBX4O00257 MIR450A1-201ENST00000362262 91 ntBASIC1.14□□□□□ -2.23
CBX4O00257 Y_RNA.205-201ENST00000364128 113 ntBASIC1.14□□□□□ -2.23
CBX4O00257 RNA5SP436-201ENST00000516020 115 ntBASIC1.14□□□□□ -2.23
CBX4O00257 RNU6-448P-201ENST00000517052 107 ntBASIC1.14□□□□□ -2.23
CBX4O00257 RNU6-1223P-201ENST00000517124 104 ntBASIC1.14□□□□□ -2.23
CBX4O00257 MIR4295-201ENST00000585286 85 ntBASIC1.14□□□□□ -2.23
CBX4O00257 RNU7-10P-201ENST00000607194 63 ntBASIC1.14□□□□□ -2.23
CBX4O00257 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.14□□□□□ -2.23
CBX4O00257 MIR6788-201ENST00000618842 66 ntBASIC1.14□□□□□ -2.23
CBX4O00257 Y_RNA.247-201ENST00000364500 92 ntBASIC1.13□□□□□ -2.23
CBX4O00257 RNU6-571P-201ENST00000384128 107 ntBASIC1.13□□□□□ -2.23
CBX4O00257 SNORA19.1-201ENST00000410656 129 ntBASIC1.13□□□□□ -2.23
CBX4O00257 AC087343.1-201ENST00000477341 475 ntBASIC1.13□□□□□ -2.23
CBX4O00257 SCARNA23-201ENST00000516060 130 ntBASIC1.13□□□□□ -2.23
CBX4O00257 MIR151B-201ENST00000584249 96 ntBASIC1.13□□□□□ -2.23
CBX4O00257 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.13□□□□□ -2.23
CBX4O00257 BX276092.1-201ENST00000427368 251 ntBASIC1.12□□□□□ -2.23
CBX4O00257 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.12□□□□□ -2.23
CBX4O00257 MIR548H5-201ENST00000580314 60 ntBASIC1.12□□□□□ -2.23
CBX4O00257 Y_RNA.818-201ENST00000618813 71 ntBASIC1.12□□□□□ -2.23
CBX4O00257 Y_RNA.56-201ENST00000362798 112 ntBASIC1.11□□□□□ -2.23
CBX4O00257 RNU6-1335P-201ENST00000365426 107 ntBASIC1.11□□□□□ -2.23
CBX4O00257 Y_RNA.536-201ENST00000384621 113 ntBASIC1.11□□□□□ -2.23
CBX4O00257 Y_RNA.544-201ENST00000384650 113 ntBASIC1.11□□□□□ -2.23
CBX4O00257 MIR590-201ENST00000385008 97 ntBASIC1.11□□□□□ -2.23
CBX4O00257 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.11□□□□□ -2.23
CBX4O00257 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 228.6 ms