Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR548U-201ENST00000390728 81 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 SNORD93-201ENST00000408813 74 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 FGF7P7-201ENST00000514120 227 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 RNU7-153P-201ENST00000516455 62 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 MIR4796-201ENST00000580742 81 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 MIR4491-201ENST00000581087 68 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 SNORD92-201ENST00000585078 85 ntBASIC2.18□□□□□ -2.06
USP3Q9Y6I4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USP3Q9Y6I4 SNORA25.9-201ENST00000365087 128 ntBASIC2.17□□□□□ -2.06
USP3Q9Y6I4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USP3Q9Y6I4 snoU13.15-201ENST00000459407 104 ntBASIC2.17□□□□□ -2.06
USP3Q9Y6I4 AC079140.2-201ENST00000506193 142 ntBASIC2.17□□□□□ -2.06
USP3Q9Y6I4 U7.4-201ENST00000614961 63 ntBASIC2.17□□□□□ -2.06
USP3Q9Y6I4 MIR519A1-201ENST00000385257 85 ntBASIC2.16□□□□□ -2.06
USP3Q9Y6I4 Y_RNA.588-201ENST00000391254 102 ntBASIC2.16□□□□□ -2.06
USP3Q9Y6I4 MIR1261-201ENST00000408659 82 ntBASIC2.16□□□□□ -2.06
USP3Q9Y6I4 AC023790.1-201ENST00000482174 347 ntBASIC2.16□□□□□ -2.06
USP3Q9Y6I4 SNORD114-1-201ENST00000362705 72 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 Y_RNA.283-201ENST00000364798 112 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 RNU1-36P-201ENST00000365130 165 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 MIR516A2-201ENST00000384888 90 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 MIR516A1-201ENST00000385033 90 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 RNU6-531P-201ENST00000516694 104 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 MIR3664-201ENST00000579074 99 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 MIR548H5-201ENST00000580314 60 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 AC103810.8-201ENST00000607347 118 ntBASIC2.15□□□□□ -2.07
USP3Q9Y6I4 SNORD1A-201ENST00000364968 72 ntBASIC2.14□□□□□ -2.07
USP3Q9Y6I4 MIR17-201ENST00000385012 84 ntBASIC2.14□□□□□ -2.07
USP3Q9Y6I4 MIR3198-2-201ENST00000577868 80 ntBASIC2.14□□□□□ -2.07
USP3Q9Y6I4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
USP3Q9Y6I4 RNU6-686P-201ENST00000364839 107 ntBASIC2.13□□□□□ -2.07
USP3Q9Y6I4 RNA5SP160-201ENST00000364866 120 ntBASIC2.13□□□□□ -2.07
USP3Q9Y6I4 Y_RNA.545-201ENST00000384652 105 ntBASIC2.13□□□□□ -2.07
USP3Q9Y6I4 MIR6840-201ENST00000611937 71 ntBASIC2.13□□□□□ -2.07
USP3Q9Y6I4 uc_338.6-201ENST00000613544 171 ntBASIC2.13□□□□□ -2.07
USP3Q9Y6I4 MIR101-2-201ENST00000362195 79 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 SNORA63.2-201ENST00000362603 126 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 RNU6-654P-201ENST00000364373 107 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 MIR635-201ENST00000384830 98 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 MIR1257-201ENST00000408490 117 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 RNA5SP338-201ENST00000410495 85 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 SNORD63B-201ENST00000411005 70 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 RNU6-717P-201ENST00000459076 104 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 RNA5SP233-201ENST00000459153 113 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 AC025033.1-201ENST00000463883 194 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 SNORA25.16-201ENST00000516741 121 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 RNU6-765P-201ENST00000516916 99 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 MIR3937-201ENST00000580135 106 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.12□□□□□ -2.07
USP3Q9Y6I4 AC104996.3-201ENST00000590718 94 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 AP000553.5-201ENST00000641933 54 ntBASIC2.12□□□□□ -2.07
USP3Q9Y6I4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
USP3Q9Y6I4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.11□□□□□ -2.07
USP3Q9Y6I4 RNU6-478P-201ENST00000363904 110 ntBASIC2.11□□□□□ -2.07
USP3Q9Y6I4 Y_RNA.264-201ENST00000364665 102 ntBASIC2.11□□□□□ -2.07
USP3Q9Y6I4 HMGN2P23-201ENST00000456759 269 ntBASIC2.11□□□□□ -2.07
USP3Q9Y6I4 MIR5089-201ENST00000580047 84 ntBASIC2.11□□□□□ -2.07
USP3Q9Y6I4 AC104984.5-201ENST00000586878 94 ntBASIC2.11□□□□□ -2.07
USP3Q9Y6I4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP3Q9Y6I4 MIRLET7A1-201ENST00000362295 80 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 RNU6-403P-201ENST00000363163 104 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 RNU6-1229P-201ENST00000364295 107 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 SNORD100-201ENST00000408573 76 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 snoU13.26-201ENST00000459452 105 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 AC005908.1-201ENST00000468701 347 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 AL627230.6-201ENST00000611129 280 ntBASIC2.1□□□□□ -2.07
USP3Q9Y6I4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USP3Q9Y6I4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.09□□□□□ -2.07
USP3Q9Y6I4 Y_RNA.56-201ENST00000362798 112 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 RNA5SP37-201ENST00000365420 130 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 RNU6-1054P-201ENST00000411293 104 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 AL450471.1-201ENST00000447509 127 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 RNU7-185P-201ENST00000459215 60 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 RNU6-75P-201ENST00000515944 104 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 SNORA18.5-201ENST00000516616 101 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 MIR3064-201ENST00000581130 66 ntBASIC2.09□□□□□ -2.07
USP3Q9Y6I4 AC023934.1-201ENST00000574529 2389 ntBASIC2.08□□□□□ -2.08
USP3Q9Y6I4 SNORD113.3-201ENST00000364630 78 ntBASIC2.08□□□□□ -2.08
USP3Q9Y6I4 Y_RNA.491-201ENST00000384417 107 ntBASIC2.08□□□□□ -2.08
USP3Q9Y6I4 AC090255.1-201ENST00000495779 349 ntBASIC2.08□□□□□ -2.08
USP3Q9Y6I4 AC019176.1-201ENST00000518519 225 ntBASIC2.08□□□□□ -2.08
USP3Q9Y6I4 FAS-AS1.1-201ENST00000615327 126 ntBASIC2.08□□□□□ -2.08
USP3Q9Y6I4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
USP3Q9Y6I4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
USP3Q9Y6I4 Y_RNA.536-201ENST00000384621 113 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 RNA5SP95-201ENST00000410319 137 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 RNU7-106P-201ENST00000459514 67 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 AL512310.8-201ENST00000550183 120 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 MIR6082-201ENST00000613604 109 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 MIR1297-201ENST00000637311 77 ntBASIC2.07□□□□□ -2.08
USP3Q9Y6I4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
USP3Q9Y6I4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP3Q9Y6I4 RNU6-1260P-201ENST00000362944 107 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
USP3Q9Y6I4 SNORD77.2-201ENST00000391045 68 ntBASIC2.06□□□□□ -2.08
USP3Q9Y6I4 SNORA40.18-201ENST00000391200 128 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 211.5 ms