Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU1-115P-201ENST00000365329 160 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 RNU6-1228P-201ENST00000391014 107 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 MIR1285-2-201ENST00000408311 88 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 MIR1277-201ENST00000408536 78 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 RNU7-195P-201ENST00000458793 62 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 SNORD38.3-201ENST00000516599 73 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 MIR3115-201ENST00000577915 68 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 AL359881.1-201ENST00000602916 267 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 AC009779.6-201ENST00000603972 165 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 RNU4-17P-201ENST00000365598 141 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 SNORD115-46-201ENST00000390982 71 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 RNU6-101P-201ENST00000410323 104 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.618-201ENST00000410949 107 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 AL445193.1-201ENST00000441183 141 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 RNU6-905P-201ENST00000384434 107 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 SNORD63B-201ENST00000411005 70 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 RNU6-86P-201ENST00000606534 107 ntBASIC-1.01□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 MIR516A2-201ENST00000384888 90 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 MIR516A1-201ENST00000385033 90 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 RNU6-721P-201ENST00000410155 105 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 RNU7-55P-201ENST00000459426 62 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 RNA5SP236-201ENST00000516169 116 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 RNA5SP470-201ENST00000516463 106 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.715-201ENST00000517082 110 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 AC002553.4-201ENST00000616896 331 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 AC104985.2-201ENST00000620598 500 ntBASIC-1.02□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 SERF1AP1-201ENST00000514575 187 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 MIR548AG2-201ENST00000581228 64 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 MIR376A2-201ENST00000636782 80 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 MIR3688-2-201ENST00000636963 87 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 RNU4-24P-201ENST00000364565 139 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 AL603914.1-201ENST00000401964 204 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 MIR548AE1-201ENST00000583292 70 ntBASIC-1.03□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 RNU6-818P-201ENST00000364837 108 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 RNU6-571P-201ENST00000384128 107 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 MIR559-201ENST00000385188 96 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 AC244090.1-201ENST00000441884 93 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 AC138907.4-201ENST00000570107 226 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 AC092794.1-201ENST00000612734 582 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 U6.100-201ENST00000636230 99 ntBASIC-1.04□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.24-201ENST00000362508 103 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.279-201ENST00000364763 95 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU6-290P-201ENST00000365212 101 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 MIR518B-201ENST00000385127 83 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 AC016907.1-201ENST00000419483 435 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNA5SP461-201ENST00000516451 104 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 SCARNA15-202ENST00000516881 127 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU6-170P-201ENST00000362832 104 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.286-201ENST00000364813 102 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 SNORD81.2-201ENST00000365153 76 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 HLA-S-202ENST00000425174 53 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 AP000533.3-201ENST00000447704 118 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU6-277P-201ENST00000516272 106 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU6-720P-201ENST00000516363 108 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU2-35P-201ENST00000516446 142 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 RNU6-570P-201ENST00000517051 105 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 AC138207.3-201ENST00000585289 166 ntBASIC-1.05□□□□□ -2.58
SCN3AQ9NY46 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 SNORD114-4-201ENST00000363962 75 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 RNU6-690P-201ENST00000365242 106 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 SNORA51.5-201ENST00000384126 131 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 RNU6-310P-201ENST00000384655 107 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.559-201ENST00000384686 107 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 MIRLET7B-201ENST00000385140 83 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 MIR616-201ENST00000385293 97 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 SNORA40.17-201ENST00000517256 115 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 AC026421.1-201ENST00000519101 163 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 AL132765.2-201ENST00000610812 351 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 AC090574.1-201ENST00000623186 233 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 AC090971.5-201ENST00000621102 293 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 snoU18.1-201ENST00000629629 71 ntBASIC-1.06□□□□□ -2.58
SCN3AQ9NY46 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.07□□□□□ -2.58
SCN3AQ9NY46 RNU6-121P-201ENST00000410525 99 ntBASIC-1.07□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 228.1 ms