Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC024614.2-201ENST00000577584 372 ntBASIC2.06□□□□□ -2.08
CCDC87Q9NVE4 MIR4452-201ENST00000583004 71 ntBASIC2.06□□□□□ -2.08
CCDC87Q9NVE4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC87Q9NVE4 RNY1P2-201ENST00000364820 117 ntBASIC2.05□□□□□ -2.08
CCDC87Q9NVE4 RNU6-580P-201ENST00000365159 107 ntBASIC2.05□□□□□ -2.08
CCDC87Q9NVE4 RNU6-644P-201ENST00000391155 98 ntBASIC2.05□□□□□ -2.08
CCDC87Q9NVE4 SUMO2P12-201ENST00000405924 140 ntBASIC2.05□□□□□ -2.08
CCDC87Q9NVE4 RNU7-61P-201ENST00000515897 61 ntBASIC2.05□□□□□ -2.08
CCDC87Q9NVE4 RNU6-90P-201ENST00000606352 106 ntBASIC2.05□□□□□ -2.08
CCDC87Q9NVE4 MIR30D-201ENST00000362283 70 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 Y_RNA.168-201ENST00000363740 102 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 RNU6-42P-201ENST00000384165 107 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 RNU6-205P-201ENST00000390858 107 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 SNORA67.6-201ENST00000391093 99 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 RNU1-123P-201ENST00000458950 160 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 AC012493.3-201ENST00000604494 112 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 AC091304.10-201ENST00000641554 121 ntBASIC2.04□□□□□ -2.08
CCDC87Q9NVE4 Y_RNA.540-201ENST00000384638 111 ntBASIC2.03□□□□□ -2.08
CCDC87Q9NVE4 RNU6-813P-201ENST00000384691 107 ntBASIC2.03□□□□□ -2.08
CCDC87Q9NVE4 MIR548G-201ENST00000408442 89 ntBASIC2.03□□□□□ -2.08
CCDC87Q9NVE4 RNU6-887P-201ENST00000410660 100 ntBASIC2.03□□□□□ -2.08
CCDC87Q9NVE4 MIR18B-201ENST00000454574 71 ntBASIC2.03□□□□□ -2.08
CCDC87Q9NVE4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 Y_RNA.247-201ENST00000364500 92 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 SNORD48-201ENST00000364953 64 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 MIR1323-201ENST00000408090 73 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 AC109327.2-201ENST00000448339 378 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 RN7SKP88-201ENST00000516847 250 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 RNA5SP102-201ENST00000516865 106 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 RNU1-92P-201ENST00000517017 135 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 RNU6-902P-201ENST00000517212 91 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 MIR4421-201ENST00000578133 69 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 7SK.8-201ENST00000612110 250 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 7SK.11-201ENST00000615477 250 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 AL157834.3-201ENST00000615543 103 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 SEPT14P17-201ENST00000617978 177 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 7SK.13-201ENST00000622040 250 ntBASIC2.02□□□□□ -2.09
CCDC87Q9NVE4 ZNF209P-201ENST00000593450 2304 ntBASIC2.01□□□□□ -2.09
CCDC87Q9NVE4 RPS27P16-201ENST00000425758 201 ntBASIC2.01□□□□□ -2.09
CCDC87Q9NVE4 AL078603.1-201ENST00000603824 313 ntBASIC2.01□□□□□ -2.09
CCDC87Q9NVE4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.01□□□□□ -2.09
CCDC87Q9NVE4 U7.3-201ENST00000616123 62 ntBASIC2.01□□□□□ -2.09
CCDC87Q9NVE4 RMST_2.1-201ENST00000617263 136 ntBASIC2.01□□□□□ -2.09
CCDC87Q9NVE4 Y_RNA.290-201ENST00000364879 114 ntBASIC2□□□□□ -2.09
CCDC87Q9NVE4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2□□□□□ -2.09
CCDC87Q9NVE4 RNA5SP220-201ENST00000516298 104 ntBASIC2□□□□□ -2.09
CCDC87Q9NVE4 MIR548Z-201ENST00000584743 97 ntBASIC2□□□□□ -2.09
CCDC87Q9NVE4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2□□□□□ -2.09
CCDC87Q9NVE4 HSBP1P2-201ENST00000299671 229 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 RNU6-1163P-201ENST00000364516 107 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 Y_RNA.467-201ENST00000384297 102 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 Y_RNA.567-201ENST00000384736 106 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 RNY1P7-201ENST00000384743 110 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 MIR517C-201ENST00000385103 95 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 SPINT5P-201ENST00000448174 155 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 MTND5P40-201ENST00000559945 246 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 MIR6734-201ENST00000621166 68 ntBASIC1.99□□□□□ -2.09
CCDC87Q9NVE4 RNU6-654P-201ENST00000364373 107 ntBASIC1.98□□□□□ -2.09
CCDC87Q9NVE4 U8.15-201ENST00000390947 134 ntBASIC1.98□□□□□ -2.09
CCDC87Q9NVE4 AC026421.1-201ENST00000519101 163 ntBASIC1.98□□□□□ -2.09
CCDC87Q9NVE4 Y_RNA.173-201ENST00000363776 113 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 SNORD116-10-201ENST00000363791 102 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 SNORD73B-201ENST00000364394 72 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 RNA5SP480-201ENST00000516840 109 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 SNORA31.24-201ENST00000517232 57 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 RNU6-86P-201ENST00000606534 107 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 AC012676.2-201ENST00000619258 186 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 AC008163.1-202ENST00000636004 2889 ntBASIC1.97□□□□□ -2.09
CCDC87Q9NVE4 AL161722.3-201ENST00000605789 2983 ntBASIC1.96□□□□□ -2.1
CCDC87Q9NVE4 AC048334.1-201ENST00000477975 159 ntBASIC1.96□□□□□ -2.1
CCDC87Q9NVE4 AC138749.4-201ENST00000563970 127 ntBASIC1.96□□□□□ -2.1
CCDC87Q9NVE4 MIR3122-201ENST00000577243 73 ntBASIC1.96□□□□□ -2.1
CCDC87Q9NVE4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC87Q9NVE4 RNU6-1125P-201ENST00000363601 107 ntBASIC1.95□□□□□ -2.1
CCDC87Q9NVE4 SNORD113.3-201ENST00000364630 78 ntBASIC1.95□□□□□ -2.1
CCDC87Q9NVE4 RNU6-480P-201ENST00000384332 107 ntBASIC1.95□□□□□ -2.1
CCDC87Q9NVE4 SNORA31.2-201ENST00000516019 134 ntBASIC1.95□□□□□ -2.1
CCDC87Q9NVE4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC87Q9NVE4 RNU6-1244P-201ENST00000363614 108 ntBASIC1.94□□□□□ -2.1
CCDC87Q9NVE4 SNORD114-22-201ENST00000365423 72 ntBASIC1.94□□□□□ -2.1
CCDC87Q9NVE4 SNORD58A-201ENST00000383875 65 ntBASIC1.94□□□□□ -2.1
CCDC87Q9NVE4 SNORA2B-201ENST00000384583 137 ntBASIC1.94□□□□□ -2.1
CCDC87Q9NVE4 RNU6-162P-201ENST00000516228 103 ntBASIC1.94□□□□□ -2.1
CCDC87Q9NVE4 AL353770.2-201ENST00000620024 78 ntBASIC1.94□□□□□ -2.1
CCDC87Q9NVE4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 RNU6-1134P-201ENST00000365156 101 ntBASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 RNU6-53P-201ENST00000365367 106 ntBASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 RNA5SP95-201ENST00000410319 137 ntBASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 AL591704.2-201ENST00000421658 181 ntBASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 AC103810.7-201ENST00000607821 91 ntBASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 U6.109-201ENST00000636749 87 ntBASIC1.93□□□□□ -2.1
CCDC87Q9NVE4 Y_RNA.119-201ENST00000363301 96 ntBASIC1.92□□□□□ -2.1
CCDC87Q9NVE4 RNA5SP133-201ENST00000363368 119 ntBASIC1.92□□□□□ -2.1
CCDC87Q9NVE4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.92□□□□□ -2.1
CCDC87Q9NVE4 MIR450A2-201ENST00000385022 100 ntBASIC1.92□□□□□ -2.1
CCDC87Q9NVE4 SNORD111-201ENST00000408139 94 ntBASIC1.92□□□□□ -2.1
CCDC87Q9NVE4 uc_338.6-201ENST00000613544 171 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms