Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 U6.109-201ENST00000636749 87 ntBASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.31□□□□□ -2.2
TRIM39Q9HCM9 RNA5SP133-201ENST00000363368 119 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 SNORA72.6-201ENST00000384520 129 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 U7.7-201ENST00000459276 60 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 AC068338.1-201ENST00000565567 176 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 MIR4491-201ENST00000581087 68 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 AL353770.2-201ENST00000620024 78 ntBASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.3□□□□□ -2.2
TRIM39Q9HCM9 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 RNU6-1313P-201ENST00000362622 102 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 RNU4-58P-201ENST00000363192 141 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 Y_RNA.360-201ENST00000365512 102 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 RNU6-1113P-201ENST00000384348 107 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 MIR758-201ENST00000390227 88 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 RNU7-156P-201ENST00000517214 74 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 MIR4694-201ENST00000578534 80 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 AC096720.1-201ENST00000604441 183 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 AC020891.4-201ENST00000605745 93 ntBASIC1.29□□□□□ -2.2
TRIM39Q9HCM9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 Y_RNA.116-201ENST00000363292 103 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 Y_RNA.163-201ENST00000363702 113 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 RNU4-36P-201ENST00000364294 144 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 RNU6-679P-201ENST00000391003 106 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 RNU1-119P-201ENST00000391122 165 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 AC015818.7-201ENST00000428754 109 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 AC087499.7-201ENST00000441958 109 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 SNORD124-201ENST00000459577 104 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 AC138749.4-201ENST00000563970 127 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 MIR3660-201ENST00000584845 100 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 AL359821.1-201ENST00000605519 182 ntBASIC1.28□□□□□ -2.2
TRIM39Q9HCM9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.4-201ENST00000362333 112 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.10-201ENST00000362371 110 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.164-201ENST00000363709 102 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 MIR520F-201ENST00000384824 87 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 MIR605-201ENST00000385078 83 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 SNORD89-201ENST00000390981 114 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 SNORA40.6-201ENST00000391153 128 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.588-201ENST00000391254 102 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 RNU6-321P-201ENST00000410912 106 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 AC004941.2-201ENST00000427009 228 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 AC004223.1-201ENST00000479840 271 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.676-201ENST00000516393 96 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 MIR4804-201ENST00000581683 73 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 AC025627.3-201ENST00000582078 182 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 MIR376B-201ENST00000614515 100 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 AL157834.3-201ENST00000615543 103 ntBASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
TRIM39Q9HCM9 RNY3P2-201ENST00000362918 102 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.119-201ENST00000363301 96 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 AL031737.1-201ENST00000450125 223 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 RNU6-1194P-201ENST00000516208 104 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 RNU6-765P-201ENST00000516916 99 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 AC141557.1-201ENST00000540982 400 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 SNORD92-201ENST00000585078 85 ntBASIC1.26□□□□□ -2.21
TRIM39Q9HCM9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 RNU6-755P-201ENST00000364400 103 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.377-201ENST00000365644 108 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 RNU6-1201P-201ENST00000384227 107 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 MIR34C-201ENST00000384831 77 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 RNU6-1307P-201ENST00000391012 103 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 AC096949.1-201ENST00000412047 152 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 TRMT112P2-201ENST00000512910 132 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 MIR6082-201ENST00000613604 109 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 AL442128.1-201ENST00000615151 90 ntBASIC1.25□□□□□ -2.21
TRIM39Q9HCM9 MIR337-201ENST00000362281 93 ntBASIC1.24□□□□□ -2.21
TRIM39Q9HCM9 SNORD38.1-201ENST00000363863 68 ntBASIC1.24□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.327-201ENST00000365201 102 ntBASIC1.24□□□□□ -2.21
TRIM39Q9HCM9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
TRIM39Q9HCM9 RNU6-44P-201ENST00000384045 107 ntBASIC1.24□□□□□ -2.21
TRIM39Q9HCM9 uc_338.28-201ENST00000612082 187 ntBASIC1.24□□□□□ -2.21
TRIM39Q9HCM9 MIR101-2-201ENST00000362195 79 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.13-201ENST00000362403 112 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 RNU6-369P-201ENST00000362515 102 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 Y_RNA.78-201ENST00000362970 110 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 RNY1P10-201ENST00000363268 113 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 RNU6-106P-201ENST00000384405 107 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 RNU7-102P-201ENST00000458948 62 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 PDCD5P2-201ENST00000507570 312 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 SNORA25.16-201ENST00000516741 121 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 MIR4500-201ENST00000579472 76 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 RMST_2.1-201ENST00000617263 136 ntBASIC1.23□□□□□ -2.21
TRIM39Q9HCM9 RNU6-832P-201ENST00000363319 107 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 SNORA51.5-201ENST00000384126 131 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 MIR577-201ENST00000385196 96 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 SNORD105-201ENST00000386910 85 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 RNU6-554P-201ENST00000410466 106 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 AL353813.1-201ENST00000440700 253 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 RNU7-56P-201ENST00000458744 62 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 RNU6-531P-201ENST00000516694 104 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 MTND5P40-201ENST00000559945 246 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 MIR8066-201ENST00000617280 78 ntBASIC1.22□□□□□ -2.21
TRIM39Q9HCM9 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.21□□□□□ -2.22
TRIM39Q9HCM9 Y_RNA.42-201ENST00000362660 108 ntBASIC1.21□□□□□ -2.22
TRIM39Q9HCM9 Y_RNA.81-201ENST00000362997 102 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 230.2 ms