Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 RNA5SP136-201ENST00000410906 107 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 AC092628.1-201ENST00000436250 252 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 TMSB4XP3-201ENST00000445144 114 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 COX6CP6-201ENST00000490840 228 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.712-201ENST00000517011 92 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.773-201ENST00000607168 90 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 AC025166.1-201ENST00000612411 163 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 MTND5P18-201ENST00000445624 1801 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 RNU6-616P-201ENST00000384353 107 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 MIR1257-201ENST00000408490 117 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 SNORD93-201ENST00000408813 74 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 AC067940.1-201ENST00000458411 300 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 RNU6-977P-201ENST00000516411 103 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 MIR4491-201ENST00000581087 68 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 SNORD92-201ENST00000585078 85 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 MIR3914-2-201ENST00000637339 95 ntBASIC0.7□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.42-201ENST00000362660 108 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.261-201ENST00000364631 102 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 SNORD116-14-201ENST00000383894 92 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 SNORD116-17-201ENST00000383929 92 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 SNORD116-15-201ENST00000384445 92 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 SNORD116-19-201ENST00000384729 92 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 MIR520F-201ENST00000384824 87 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 MIR206-201ENST00000384872 86 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 SNORD105-201ENST00000386910 85 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 RNU7-102P-201ENST00000458948 62 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 RNU7-6P-201ENST00000516845 62 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 RNU7-156P-201ENST00000517214 74 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 AL365222.1-201ENST00000614661 98 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 AC105081.1-201ENST00000617727 106 ntBASIC0.69□□□□□ -2.3
UPF3AQ9H1J1 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 AL157777.2-201ENST00000258070 137 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.13-201ENST00000362403 112 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORD115-19-201ENST00000363098 82 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORD115-18-201ENST00000363293 82 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.127-201ENST00000363386 109 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORD115-17-201ENST00000364612 82 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.299-201ENST00000364973 94 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORD113-1-201ENST00000365321 69 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 MIR520H-201ENST00000385126 88 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 RNU6-1321P-201ENST00000390905 107 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 MIR938-201ENST00000401216 83 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORD99-201ENST00000408612 74 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 RNU4-83P-201ENST00000410863 133 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 AC244098.3-201ENST00000424803 96 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORD33.1-201ENST00000516213 88 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 SNORA25.16-201ENST00000516741 121 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 AC138749.4-201ENST00000563970 127 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 AL353765.1-201ENST00000605514 183 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 MIR1255B1-201ENST00000636325 63 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 MIR924-201ENST00000638017 53 ntBASIC0.68□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.30-201ENST00000362572 97 ntBASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 SNORD114-10-201ENST00000363409 72 ntBASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 RNA5SP457-201ENST00000363657 124 ntBASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.344-201ENST00000365381 112 ntBASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 RNU6-1333P-201ENST00000516162 93 ntBASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 MIR3163-201ENST00000581592 73 ntBASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
UPF3AQ9H1J1 HSBP1P2-201ENST00000299671 229 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 MIR548D2-201ENST00000384955 97 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 AC098934.3-201ENST00000430450 190 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 AL353813.1-201ENST00000440700 253 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 MIR6082-201ENST00000613604 109 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 AC243829.3-201ENST00000622177 108 ntBASIC0.66□□□□□ -2.3
UPF3AQ9H1J1 RNU6-403P-201ENST00000363163 104 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.213-201ENST00000364178 111 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.258-201ENST00000364613 105 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.353-201ENST00000365440 108 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 MIR573-201ENST00000384964 99 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 RNU7-2P-201ENST00000516096 62 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 AC090897.1-201ENST00000580909 226 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 AC025627.3-201ENST00000582078 182 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 AL136317.1-201ENST00000612653 226 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 U6.109-201ENST00000636749 87 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 AC132825.6-201ENST00000638861 357 ntBASIC0.65□□□□□ -2.31
UPF3AQ9H1J1 RNA5SP133-201ENST00000363368 119 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 SNORD115-35-201ENST00000365122 82 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.448-201ENST00000384185 108 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 RNU6-364P-201ENST00000384387 107 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.563-201ENST00000384707 108 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 SNORD77B-201ENST00000391112 67 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 RNU6-406P-201ENST00000516470 107 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 RNU6-531P-201ENST00000516694 104 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 RNA5SP330-201ENST00000517096 96 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 AL035470.1-201ENST00000622571 220 ntBASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
UPF3AQ9H1J1 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNY1P8-201ENST00000383970 114 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-22P-201ENST00000384355 107 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.549-201ENST00000384657 102 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU1-119P-201ENST00000391122 165 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 SNORD100-201ENST00000408573 76 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-447P-201ENST00000410293 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-1118P-201ENST00000410382 104 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms