Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SNORD116-17-201ENST00000383929 92 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 SNORD116-15-201ENST00000384445 92 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 SNORD116-19-201ENST00000384729 92 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 MIR206-201ENST00000384872 86 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 MT-TI-201ENST00000387365 69 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 MIR1270-201ENST00000459320 83 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 MIR3910-1-201ENST00000580936 111 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 AC132825.6-201ENST00000638861 357 ntBASIC0.87□□□□□ -2.27
PAAF1Q9BRP4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 Y_RNA.448-201ENST00000384185 108 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 MIRLET7F2-201ENST00000385277 83 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 Y_RNA.588-201ENST00000391254 102 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 AC008267.6-201ENST00000441664 139 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 RNU6-1333P-201ENST00000516162 93 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 MIR4714-201ENST00000580728 77 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 AC008608.1-201ENST00000603910 127 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 MIR6082-201ENST00000613604 109 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 AC087741.2-201ENST00000619415 172 ntBASIC0.86□□□□□ -2.27
PAAF1Q9BRP4 Y_RNA.127-201ENST00000363386 109 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 RNU6-865P-201ENST00000364772 107 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 RNU6-81P-201ENST00000365608 104 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 Y_RNA.540-201ENST00000384638 111 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 MIR548D2-201ENST00000384955 97 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 RNU6-735P-201ENST00000410612 107 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 RNU7-2P-201ENST00000516096 62 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 RNU6-659P-201ENST00000516454 104 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 SNORA25.16-201ENST00000516741 121 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 U6.95-201ENST00000636931 70 ntBASIC0.85□□□□□ -2.27
PAAF1Q9BRP4 RNU4-58P-201ENST00000363192 141 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 MIR573-201ENST00000384964 99 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 MIR605-201ENST00000385078 83 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 RNU6-1321P-201ENST00000390905 107 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 RNA5SP222-201ENST00000411039 105 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 AC004941.2-201ENST00000427009 228 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 RNU7-48P-201ENST00000458875 63 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 PSMC1P5-201ENST00000512850 177 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 RNU6-62P-201ENST00000516526 102 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 Y_RNA.712-201ENST00000517011 92 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 RNU6-448P-201ENST00000517052 107 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 MIR3914-2-201ENST00000637339 95 ntBASIC0.84□□□□□ -2.27
PAAF1Q9BRP4 SNORD115-19-201ENST00000363098 82 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.98-201ENST00000363109 102 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 SNORD115-18-201ENST00000363293 82 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 SNORD114-2-201ENST00000363953 78 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 SNORD115-17-201ENST00000364612 82 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 RNA5SP117-201ENST00000365294 118 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 RNU6-1117P-201ENST00000384525 104 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 MIR548A3-201ENST00000385297 97 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 RNU4-61P-201ENST00000411243 107 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 AC096949.1-201ENST00000412047 152 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.649-201ENST00000459077 103 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 RNU6-531P-201ENST00000516694 104 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.697-201ENST00000516776 113 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 AC090897.1-201ENST00000580909 226 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 MIR8066-201ENST00000617280 78 ntBASIC0.83□□□□□ -2.28
PAAF1Q9BRP4 MIR101-2-201ENST00000362195 79 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.42-201ENST00000362660 108 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.119-201ENST00000363301 96 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 SNORD115-35-201ENST00000365122 82 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 AC244098.3-201ENST00000424803 96 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 AC138749.4-201ENST00000563970 127 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.773-201ENST00000607168 90 ntBASIC0.82□□□□□ -2.28
PAAF1Q9BRP4 RNY1P2-201ENST00000364820 117 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.507-201ENST00000384500 99 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 RPL39P28-201ENST00000465655 155 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 RNU6-1194P-201ENST00000516208 104 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 RNU6-521P-201ENST00000516663 105 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 RNU6-765P-201ENST00000516916 99 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 RNU6-789P-201ENST00000517105 102 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 AC013244.2-201ENST00000603396 103 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 AP001362.1-201ENST00000625165 124 ntBASIC0.81□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.261-201ENST00000364631 102 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.328-201ENST00000365208 113 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 SNORA36.2-201ENST00000384004 127 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 MIR598-201ENST00000384868 97 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 MIR548A1-201ENST00000385041 97 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 SNORD33.1-201ENST00000516213 88 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 AP003327.1-201ENST00000529684 127 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 MIR4500-201ENST00000579472 76 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 MIR3612-201ENST00000579753 87 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 AL670379.3-201ENST00000605040 251 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 MIR6835-201ENST00000621552 64 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 MIR1255B1-201ENST00000636325 63 ntBASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.155-201ENST00000363632 101 ntBASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 RNU4-67P-201ENST00000364569 141 ntBASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 SNORA7.5-201ENST00000410672 110 ntBASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 AC007012.1-201ENST00000567192 175 ntBASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 AL365222.1-201ENST00000614661 98 ntBASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.344-201ENST00000365381 112 ntBASIC0.78□□□□□ -2.28
PAAF1Q9BRP4 Y_RNA.362-201ENST00000365518 110 ntBASIC0.78□□□□□ -2.28
PAAF1Q9BRP4 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.28
PAAF1Q9BRP4 AC002350.1-201ENST00000490759 375 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms