Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 uc_338.17-201ENST00000619633 179 ntBASIC0.52□□□□□ -2.33
NKX3-1Q99801 Y_RNA.32-201ENST00000362589 110 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 RNU6-945P-201ENST00000383947 107 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 RNU6-209P-201ENST00000384118 107 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 MIR92A1-201ENST00000385233 78 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 MTND4LP9-201ENST00000427694 174 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 AL158147.1-201ENST00000443970 75 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 RNU6-781P-201ENST00000516377 101 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 MIR3678-201ENST00000578455 94 ntBASIC0.51□□□□□ -2.33
NKX3-1Q99801 RNA5SP347-201ENST00000362445 119 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 RNU6-235P-201ENST00000362644 107 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 SNORD114-10-201ENST00000363409 72 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 RNU6-291P-201ENST00000384720 107 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 RNU6-1321P-201ENST00000390905 107 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 MIR1263-201ENST00000408324 86 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 AL157398.1-201ENST00000452981 186 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 RNU4-54P-201ENST00000516428 129 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 SNORA31.14-201ENST00000516728 116 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 RNU6-765P-201ENST00000516916 99 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 DEFB131E-201ENST00000532329 154 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 PVT1_3.1-201ENST00000620853 95 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 uc_338.16-201ENST00000621804 95 ntBASIC0.5□□□□□ -2.33
NKX3-1Q99801 Y_RNA.119-201ENST00000363301 96 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 Y_RNA.299-201ENST00000364973 94 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 RNU6-616P-201ENST00000384353 107 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 Y_RNA.536-201ENST00000384621 113 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 Y_RNA.568-201ENST00000384742 113 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 MIR206-201ENST00000384872 86 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 MIR216A-201ENST00000385063 110 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 RNU6-257P-201ENST00000410238 98 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 RNU6-229P-201ENST00000516614 102 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 Y_RNA.697-201ENST00000516776 113 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 RNU7-6P-201ENST00000516845 62 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 AC018659.1-201ENST00000551083 169 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 U7.2-201ENST00000607576 63 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 AC087741.2-201ENST00000619415 172 ntBASIC0.49□□□□□ -2.33
NKX3-1Q99801 RNA5SP499-201ENST00000363982 119 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 RNA5SP245-201ENST00000364239 121 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 RNU6-647P-201ENST00000364243 107 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 RNU6-535P-201ENST00000384722 107 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 RNU6-735P-201ENST00000410612 107 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 RNA5SP121-201ENST00000516537 101 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 AP003327.1-201ENST00000529684 127 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 Y_RNA.773-201ENST00000607168 90 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 MIR6513-201ENST00000621188 64 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 MIR5087-201ENST00000635826 76 ntBASIC0.48□□□□□ -2.33
NKX3-1Q99801 RNU6-774P-201ENST00000363238 107 ntBASIC0.47□□□□□ -2.33
NKX3-1Q99801 RNA5SP517-201ENST00000364724 117 ntBASIC0.47□□□□□ -2.33
NKX3-1Q99801 RNY1P5-201ENST00000383890 115 ntBASIC0.47□□□□□ -2.33
NKX3-1Q99801 Y_RNA.448-201ENST00000384185 108 ntBASIC0.47□□□□□ -2.33
NKX3-1Q99801 RNY1P4-201ENST00000384595 115 ntBASIC0.47□□□□□ -2.33
NKX3-1Q99801 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.47□□□□□ -2.33
NKX3-1Q99801 RNA5SP94-201ENST00000516917 108 ntBASIC0.47□□□□□ -2.33
NKX3-1Q99801 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.47□□□□□ -2.33
NKX3-1Q99801 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
NKX3-1Q99801 Y_RNA.36-201ENST00000362602 112 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 SNORA63.5-201ENST00000363548 123 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 RNY1P2-201ENST00000364820 117 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 RNU4-45P-201ENST00000365469 141 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 SNORD77B-201ENST00000391112 67 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.46□□□□□ -2.34
NKX3-1Q99801 RNU6-1194P-201ENST00000516208 104 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 RNU6-1234P-201ENST00000516877 103 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 AC243829.3-201ENST00000622177 108 ntBASIC0.46□□□□□ -2.34
NKX3-1Q99801 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.45□□□□□ -2.34
NKX3-1Q99801 RNU4-58P-201ENST00000363192 141 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 SNORA36.1-201ENST00000363424 132 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 SNORD18A-201ENST00000363753 72 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 Y_RNA.343-201ENST00000365354 112 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 AC098934.3-201ENST00000430450 190 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 RNU7-2P-201ENST00000516096 62 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 RNA5SP480-201ENST00000516840 109 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 AC092634.7-201ENST00000621022 103 ntBASIC0.45□□□□□ -2.34
NKX3-1Q99801 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
NKX3-1Q99801 Y_RNA.198-201ENST00000364013 98 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 Y_RNA.466-201ENST00000384294 113 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 Y_RNA.528-201ENST00000384575 108 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 Y_RNA.567-201ENST00000384736 106 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 SNORA40-201ENST00000388090 126 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 RNU7-48P-201ENST00000458875 63 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 RNU6-1211P-201ENST00000459179 105 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 SNORA68.3-201ENST00000515906 83 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 RNU6-1061P-201ENST00000516530 99 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 MIR4500-201ENST00000579472 76 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 MIR3133-201ENST00000583157 78 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 TUG1_4.1-201ENST00000619464 181 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 MIR1255B1-201ENST00000636325 63 ntBASIC0.44□□□□□ -2.34
NKX3-1Q99801 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.43□□□□□ -2.34
NKX3-1Q99801 SNORD115-35-201ENST00000365122 82 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 Y_RNA.525-201ENST00000384570 113 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 MIR936-201ENST00000401264 98 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 Y_RNA.630-201ENST00000411370 108 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.43□□□□□ -2.34
NKX3-1Q99801 RNU6-971P-201ENST00000516920 106 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 RN7SL793P-201ENST00000583259 296 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 SNORA25.18-201ENST00000607153 114 ntBASIC0.43□□□□□ -2.34
NKX3-1Q99801 Y_RNA.328-201ENST00000365208 113 ntBASIC0.42□□□□□ -2.34
NKX3-1Q99801 MIRLET7F2-201ENST00000385277 83 ntBASIC0.42□□□□□ -2.34
NKX3-1Q99801 Y_RNA.586-201ENST00000391146 98 ntBASIC0.42□□□□□ -2.34
NKX3-1Q99801 RNA5SP136-201ENST00000410906 107 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 236.4 ms