Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 SNORD15B-201ENST00000384714 146 ntBASIC4.07□□□□□ -1.76
NCBP3Q53F19 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC4.07□□□□□ -1.76
NCBP3Q53F19 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC4.07□□□□□ -1.76
NCBP3Q53F19 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
NCBP3Q53F19 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
NCBP3Q53F19 RNU6-934P-201ENST00000365154 107 ntBASIC4.06□□□□□ -1.76
NCBP3Q53F19 RNU6-535P-201ENST00000384722 107 ntBASIC4.06□□□□□ -1.76
NCBP3Q53F19 SNORA46-201ENST00000384762 135 ntBASIC4.06□□□□□ -1.76
NCBP3Q53F19 MIR466-201ENST00000580653 84 ntBASIC4.06□□□□□ -1.76
NCBP3Q53F19 SNORD67-201ENST00000390833 111 ntBASIC4.05□□□□□ -1.76
NCBP3Q53F19 AC245166.1-201ENST00000521012 253 ntBASIC4.05□□□□□ -1.76
NCBP3Q53F19 AL049779.4-201ENST00000604500 156 ntBASIC4.05□□□□□ -1.76
NCBP3Q53F19 AC016717.2-201ENST00000609089 5141 ntBASIC4.04□□□□□ -1.76
NCBP3Q53F19 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
NCBP3Q53F19 RNA5SP276-201ENST00000362580 94 ntBASIC4.04□□□□□ -1.76
NCBP3Q53F19 MIR125B2-201ENST00000385128 89 ntBASIC4.04□□□□□ -1.76
NCBP3Q53F19 HDX-206ENST00000506585 6158 ntTSL 2 BASIC4.03□□□□□ -1.76
NCBP3Q53F19 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
NCBP3Q53F19 RNA5SP212-201ENST00000391223 107 ntBASIC4.03□□□□□ -1.76
NCBP3Q53F19 MIR4771-2-201ENST00000577758 74 ntBASIC4.03□□□□□ -1.76
NCBP3Q53F19 MIR4771-1-201ENST00000582617 74 ntBASIC4.03□□□□□ -1.76
NCBP3Q53F19 MIR8057-201ENST00000620957 69 ntBASIC4.03□□□□□ -1.76
NCBP3Q53F19 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
NCBP3Q53F19 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
NCBP3Q53F19 SNORA25.5-201ENST00000363782 126 ntBASIC4.02□□□□□ -1.77
NCBP3Q53F19 RNA5SP192-201ENST00000364404 120 ntBASIC4.02□□□□□ -1.77
NCBP3Q53F19 MIR4287-201ENST00000579398 78 ntBASIC4.02□□□□□ -1.77
NCBP3Q53F19 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
NCBP3Q53F19 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
NCBP3Q53F19 MIR148B-201ENST00000362252 99 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 U8.2-201ENST00000363156 134 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 RNA5SP126-201ENST00000365092 109 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 Y_RNA.510-201ENST00000384511 114 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 SNORD75.2-201ENST00000408784 58 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 IGLVVI-22-1-201ENST00000521183 211 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 SNORA77B-201ENST00000578179 125 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC4.01□□□□□ -1.77
NCBP3Q53F19 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC4.01□□□□□ -1.77
NCBP3Q53F19 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC4.01□□□□□ -1.77
NCBP3Q53F19 Y_RNA.375-201ENST00000365625 101 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 MIR203A-201ENST00000384836 110 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC4□□□□□ -1.77
NCBP3Q53F19 MIR3920-201ENST00000581751 86 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 AL645939.4-201ENST00000604495 135 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 AC103810.8-201ENST00000607347 118 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 AL162274.2-201ENST00000614406 332 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 MIR6509-201ENST00000614603 85 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 AC009487.2-201ENST00000420969 6821 ntBASIC4□□□□□ -1.77
NCBP3Q53F19 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
NCBP3Q53F19 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
NCBP3Q53F19 RNA5SP374-201ENST00000362939 125 ntBASIC3.98□□□□□ -1.77
NCBP3Q53F19 RNU6-1039P-201ENST00000383931 107 ntBASIC3.98□□□□□ -1.77
NCBP3Q53F19 RNA5SP274-201ENST00000410484 108 ntBASIC3.98□□□□□ -1.77
NCBP3Q53F19 AC008885.1-201ENST00000514930 301 ntBASIC3.98□□□□□ -1.77
NCBP3Q53F19 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
NCBP3Q53F19 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NCBP3Q53F19 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC3.97□□□□□ -1.77
NCBP3Q53F19 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NCBP3Q53F19 MIR22-201ENST00000362190 85 ntBASIC3.97□□□□□ -1.77
NCBP3Q53F19 SNORD115-44-201ENST00000365391 82 ntBASIC3.97□□□□□ -1.77
NCBP3Q53F19 UQCRHP3-201ENST00000451503 251 ntBASIC3.97□□□□□ -1.77
NCBP3Q53F19 Y_RNA.722-201ENST00000517279 114 ntBASIC3.97□□□□□ -1.77
NCBP3Q53F19 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NCBP3Q53F19 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NCBP3Q53F19 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
NCBP3Q53F19 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
NCBP3Q53F19 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.96□□□□□ -1.78
NCBP3Q53F19 RNU6-940P-201ENST00000363433 104 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 Y_RNA.330-201ENST00000365230 109 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 RNU6-851P-201ENST00000384565 107 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NCBP3Q53F19 NAMPTP3-201ENST00000569273 224 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 AC008608.1-201ENST00000603910 127 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 AC010297.1-201ENST00000623948 149 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 AC006386.2-201ENST00000624491 75 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 AC012005.1-201ENST00000624575 75 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 MIR7978-201ENST00000636158 59 ntBASIC3.96□□□□□ -1.78
NCBP3Q53F19 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC3.96□□□□□ -1.78
NCBP3Q53F19 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC3.95□□□□□ -1.78
NCBP3Q53F19 RPL23AP42-201ENST00000471152 471 ntBASIC3.95□□□□□ -1.78
NCBP3Q53F19 MIR8063-201ENST00000621930 81 ntBASIC3.95□□□□□ -1.78
NCBP3Q53F19 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NCBP3Q53F19 SNORD113.3-201ENST00000364630 78 ntBASIC3.94□□□□□ -1.78
NCBP3Q53F19 RNA5SP82-201ENST00000516707 92 ntBASIC3.94□□□□□ -1.78
NCBP3Q53F19 RNU6-369P-201ENST00000362515 102 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 RNU6-1335P-201ENST00000365426 107 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 SNORA67.3-201ENST00000384366 140 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 RN7SL75P-201ENST00000461926 281 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 S100A11P2-201ENST00000467589 312 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 RN7SL633P-201ENST00000488974 297 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 RNA5SP341-201ENST00000516261 117 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 AC107016.2-201ENST00000547968 190 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 MIR3664-201ENST00000579074 99 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 MIR4325-201ENST00000583049 90 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 AC073869.9-201ENST00000641610 120 ntBASIC3.93□□□□□ -1.78
NCBP3Q53F19 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
NCBP3Q53F19 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
NCBP3Q53F19 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NCBP3Q53F19 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
NCBP3Q53F19 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms