Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.73-201ENST00000362910 113 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 Y_RNA.95-201ENST00000363079 95 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 RNU4-36P-201ENST00000364294 144 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 Y_RNA.377-201ENST00000365644 108 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 SNORD83.1-201ENST00000411362 77 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 AC015818.7-201ENST00000428754 109 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 AC087499.7-201ENST00000441958 109 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 Y_RNA.659-201ENST00000515994 113 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 RNU6-970P-201ENST00000516312 107 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 SNORA72.7-201ENST00000516349 94 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 RNU6-1018P-201ENST00000516577 106 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 SNORA70.22-201ENST00000517160 124 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 AC026421.1-201ENST00000519101 163 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 AC012676.2-201ENST00000619258 186 ntBASIC1.22□□□□□ -2.21
HOXA4Q00056 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.22□□□□□ -2.21
HOXA4Q00056 AC008163.1-202ENST00000636004 2889 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 RNA5SP173-201ENST00000364857 136 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 RNU6-573P-201ENST00000383938 106 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 MIR18B-201ENST00000454574 71 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 RNU7-48P-201ENST00000458875 63 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.21□□□□□ -2.22
HOXA4Q00056 Y_RNA.98-201ENST00000363109 102 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 RNU6-865P-201ENST00000364772 107 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 Y_RNA.558-201ENST00000384685 113 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 MT-TF-201ENST00000387314 71 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 RNU7-95P-201ENST00000459222 64 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 SNORA31.24-201ENST00000517232 57 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 AC133485.1-201ENST00000567176 124 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 RNU6-86P-201ENST00000606534 107 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 AC106800.4-201ENST00000614905 153 ntBASIC1.2□□□□□ -2.22
HOXA4Q00056 Y_RNA.17-201ENST00000362433 111 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 Y_RNA.220-201ENST00000364244 109 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-934P-201ENST00000365154 107 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 MIR517C-201ENST00000385103 95 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
HOXA4Q00056 SNORA26.2-201ENST00000390922 122 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-482P-201ENST00000391068 107 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 SNORD111-201ENST00000408139 94 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 SNORD93-201ENST00000408813 74 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-447P-201ENST00000410293 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-1118P-201ENST00000410382 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-1076P-201ENST00000410397 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-355P-201ENST00000410427 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-791P-201ENST00000410467 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-705P-201ENST00000410601 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-1100P-201ENST00000410691 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-860P-201ENST00000410860 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-1217P-201ENST00000411276 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-785P-201ENST00000411324 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU7-90P-201ENST00000459216 62 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 AC103810.7-201ENST00000607821 91 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 U6.90-201ENST00000614007 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 U6.70-201ENST00000620287 104 ntBASIC1.19□□□□□ -2.22
HOXA4Q00056 RNU6-1134P-201ENST00000365156 101 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 RNU6-997P-201ENST00000384725 107 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 AC002429.1-201ENST00000437672 148 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 RN7SKP12-201ENST00000516275 143 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 AC138749.4-201ENST00000563970 127 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 MIR4491-201ENST00000581087 68 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 MIR1245B-201ENST00000636115 69 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 AC023934.1-201ENST00000574529 2389 ntBASIC1.18□□□□□ -2.22
HOXA4Q00056 RNA5SP133-201ENST00000363368 119 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU6-1244P-201ENST00000363614 108 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU6-219P-201ENST00000364728 107 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNY1P2-201ENST00000364820 117 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU1-36P-201ENST00000365130 165 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 MIR1302-4-201ENST00000408701 150 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU4-83P-201ENST00000410863 133 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 AP1B1P2-201ENST00000416196 106 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RPS29P28-201ENST00000446439 141 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU7-185P-201ENST00000459215 60 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 RNU1-92P-201ENST00000517017 135 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 U6.109-201ENST00000636749 87 ntBASIC1.17□□□□□ -2.22
HOXA4Q00056 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
HOXA4Q00056 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HOXA4Q00056 SNORD45B-201ENST00000364617 72 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 SNORA25-201ENST00000384384 134 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 MIR222-201ENST00000384992 110 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 Y_RNA.588-201ENST00000391254 102 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 RNU6-402P-201ENST00000410678 103 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 AL603825.1-201ENST00000438481 80 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 RNU1-98P-201ENST00000458992 160 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 RNU7-40P-201ENST00000516397 64 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 MIR4771-2-201ENST00000577758 74 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 AC090897.1-201ENST00000580909 226 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 MIR4771-1-201ENST00000582617 74 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 AP001362.1-201ENST00000625165 124 ntBASIC1.16□□□□□ -2.22
HOXA4Q00056 Y_RNA.10-201ENST00000362371 110 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 RNU6-403P-201ENST00000363163 104 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 Y_RNA.119-201ENST00000363301 96 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 Y_RNA.191-201ENST00000363972 113 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 SNORA67.5-201ENST00000391036 107 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 RNU6-887P-201ENST00000410660 100 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 RPS26P5-201ENST00000418544 335 ntBASIC1.15□□□□□ -2.23
HOXA4Q00056 AC004223.1-201ENST00000479840 271 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms