Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 MIR3660-201ENST00000584845 100 ntBASIC1□□□□□ -2.25
RFX2P48378 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1□□□□□ -2.25
RFX2P48378 AL442128.1-201ENST00000615151 90 ntBASIC1□□□□□ -2.25
RFX2P48378 AP001362.1-201ENST00000625165 124 ntBASIC1□□□□□ -2.25
RFX2P48378 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
RFX2P48378 RNU6-369P-201ENST00000362515 102 ntBASIC0.99□□□□□ -2.25
RFX2P48378 Y_RNA.119-201ENST00000363301 96 ntBASIC0.99□□□□□ -2.25
RFX2P48378 MIR100-201ENST00000385259 80 ntBASIC0.99□□□□□ -2.25
RFX2P48378 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.99□□□□□ -2.25
RFX2P48378 AL591806.2-201ENST00000433122 173 ntBASIC0.99□□□□□ -2.25
RFX2P48378 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
RFX2P48378 AC108210.2-201ENST00000503681 201 ntBASIC0.99□□□□□ -2.25
RFX2P48378 Y_RNA.659-201ENST00000515994 113 ntBASIC0.99□□□□□ -2.25
RFX2P48378 RNU6-1006P-201ENST00000516998 103 ntBASIC0.99□□□□□ -2.25
RFX2P48378 MIR4500-201ENST00000579472 76 ntBASIC0.99□□□□□ -2.25
RFX2P48378 AC090897.1-201ENST00000580909 226 ntBASIC0.99□□□□□ -2.25
RFX2P48378 MIR4303-201ENST00000581299 66 ntBASIC0.99□□□□□ -2.25
RFX2P48378 MIR4676-201ENST00000583078 72 ntBASIC0.99□□□□□ -2.25
RFX2P48378 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.98□□□□□ -2.25
RFX2P48378 SNORA25.8-201ENST00000364831 128 ntBASIC0.98□□□□□ -2.25
RFX2P48378 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
RFX2P48378 RNU6-1113P-201ENST00000384348 107 ntBASIC0.98□□□□□ -2.25
RFX2P48378 Y_RNA.495-201ENST00000384435 112 ntBASIC0.98□□□□□ -2.25
RFX2P48378 MIR125B2-201ENST00000385128 89 ntBASIC0.98□□□□□ -2.25
RFX2P48378 AC067940.1-201ENST00000458411 300 ntBASIC0.98□□□□□ -2.25
RFX2P48378 SNORD124-201ENST00000459577 104 ntBASIC0.98□□□□□ -2.25
RFX2P48378 RNU6-531P-201ENST00000516694 104 ntBASIC0.98□□□□□ -2.25
RFX2P48378 RNU6-537P-201ENST00000517277 103 ntBASIC0.98□□□□□ -2.25
RFX2P48378 AC103810.9-201ENST00000606688 112 ntBASIC0.98□□□□□ -2.25
RFX2P48378 AC091304.10-201ENST00000641554 121 ntBASIC0.98□□□□□ -2.25
RFX2P48378 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.97□□□□□ -2.25
RFX2P48378 MIR1-1-201ENST00000362147 71 ntBASIC0.97□□□□□ -2.25
RFX2P48378 Y_RNA.13-201ENST00000362403 112 ntBASIC0.97□□□□□ -2.25
RFX2P48378 Y_RNA.78-201ENST00000362970 110 ntBASIC0.97□□□□□ -2.25
RFX2P48378 Y_RNA.377-201ENST00000365644 108 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6-32P-201ENST00000383948 107 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6-13P-201ENST00000384248 107 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6-12P-201ENST00000384604 107 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6-41P-201ENST00000384741 107 ntBASIC0.97□□□□□ -2.25
RFX2P48378 MIR19B1-201ENST00000384829 87 ntBASIC0.97□□□□□ -2.25
RFX2P48378 MIR618-201ENST00000385287 98 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6-795P-201ENST00000516323 103 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU6-977P-201ENST00000516411 103 ntBASIC0.97□□□□□ -2.25
RFX2P48378 RNU1-17P-201ENST00000363022 152 ntBASIC0.96□□□□□ -2.26
RFX2P48378 SNORD38.1-201ENST00000363863 68 ntBASIC0.96□□□□□ -2.26
RFX2P48378 RNA5SP89-201ENST00000410300 108 ntBASIC0.96□□□□□ -2.26
RFX2P48378 Y_RNA.601-201ENST00000410500 113 ntBASIC0.96□□□□□ -2.26
RFX2P48378 SPINT5P-201ENST00000448174 155 ntBASIC0.96□□□□□ -2.26
RFX2P48378 snoU13.23-201ENST00000458863 104 ntBASIC0.96□□□□□ -2.26
RFX2P48378 RNU6-168P-201ENST00000516189 101 ntBASIC0.96□□□□□ -2.26
RFX2P48378 RNA5SP404-201ENST00000517118 132 ntBASIC0.96□□□□□ -2.26
RFX2P48378 RNU7-156P-201ENST00000517214 74 ntBASIC0.96□□□□□ -2.26
RFX2P48378 MTND5P40-201ENST00000559945 246 ntBASIC0.96□□□□□ -2.26
RFX2P48378 MIR548Z-201ENST00000584743 97 ntBASIC0.96□□□□□ -2.26
RFX2P48378 AC096720.1-201ENST00000604441 183 ntBASIC0.96□□□□□ -2.26
RFX2P48378 AL512598.1-201ENST00000610158 273 ntBASIC0.96□□□□□ -2.26
RFX2P48378 AC012531.4-201ENST00000616509 177 ntBASIC0.96□□□□□ -2.26
RFX2P48378 AL353997.5-201ENST00000618886 171 ntBASIC0.96□□□□□ -2.26
RFX2P48378 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
RFX2P48378 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
RFX2P48378 Y_RNA.10-201ENST00000362371 110 ntBASIC0.95□□□□□ -2.26
RFX2P48378 Y_RNA.140-201ENST00000363474 103 ntBASIC0.95□□□□□ -2.26
RFX2P48378 RNU6-53P-201ENST00000365367 106 ntBASIC0.95□□□□□ -2.26
RFX2P48378 RNU6-364P-201ENST00000384387 107 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR520F-201ENST00000384824 87 ntBASIC0.95□□□□□ -2.26
RFX2P48378 SNORD89-201ENST00000390981 114 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR942-201ENST00000401111 86 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR938-201ENST00000401216 83 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR1827-201ENST00000408549 66 ntBASIC0.95□□□□□ -2.26
RFX2P48378 BX276092.1-201ENST00000427368 251 ntBASIC0.95□□□□□ -2.26
RFX2P48378 SCARNA23-201ENST00000516060 130 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR4804-201ENST00000581683 73 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR4295-201ENST00000585286 85 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR6082-201ENST00000613604 109 ntBASIC0.95□□□□□ -2.26
RFX2P48378 AL157834.3-201ENST00000615543 103 ntBASIC0.95□□□□□ -2.26
RFX2P48378 MIR8066-201ENST00000617280 78 ntBASIC0.95□□□□□ -2.26
RFX2P48378 SNORD45B-201ENST00000364617 72 ntBASIC0.94□□□□□ -2.26
RFX2P48378 SNORD38.2-201ENST00000384470 69 ntBASIC0.94□□□□□ -2.26
RFX2P48378 Y_RNA.544-201ENST00000384650 113 ntBASIC0.94□□□□□ -2.26
RFX2P48378 MIR548G-201ENST00000408442 89 ntBASIC0.94□□□□□ -2.26
RFX2P48378 AC109327.2-201ENST00000448339 378 ntBASIC0.94□□□□□ -2.26
RFX2P48378 RNU7-102P-201ENST00000458948 62 ntBASIC0.94□□□□□ -2.26
RFX2P48378 AC015712.3-201ENST00000559380 164 ntBASIC0.94□□□□□ -2.26
RFX2P48378 AC013244.2-201ENST00000603396 103 ntBASIC0.94□□□□□ -2.26
RFX2P48378 AP001318.4-201ENST00000616637 121 ntBASIC0.94□□□□□ -2.26
RFX2P48378 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.94□□□□□ -2.26
RFX2P48378 RNU6-170P-201ENST00000362832 104 ntBASIC0.93□□□□□ -2.26
RFX2P48378 RNU4-58P-201ENST00000363192 141 ntBASIC0.93□□□□□ -2.26
RFX2P48378 Y_RNA.467-201ENST00000384297 102 ntBASIC0.93□□□□□ -2.26
RFX2P48378 RNU7-56P-201ENST00000458744 62 ntBASIC0.93□□□□□ -2.26
RFX2P48378 Y_RNA.677-201ENST00000516401 85 ntBASIC0.93□□□□□ -2.26
RFX2P48378 MIR4421-201ENST00000578133 69 ntBASIC0.93□□□□□ -2.26
RFX2P48378 SNORD92-201ENST00000585078 85 ntBASIC0.93□□□□□ -2.26
RFX2P48378 AC104984.5-201ENST00000586878 94 ntBASIC0.93□□□□□ -2.26
RFX2P48378 AC008608.1-201ENST00000603910 127 ntBASIC0.93□□□□□ -2.26
RFX2P48378 RNU6-90P-201ENST00000606352 106 ntBASIC0.93□□□□□ -2.26
RFX2P48378 Y_RNA.818-201ENST00000618813 71 ntBASIC0.93□□□□□ -2.26
RFX2P48378 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
RFX2P48378 HSBP1P2-201ENST00000299671 229 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms