Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNU6-295P-201ENST00000516901 104 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 AC140658.3-201ENST00000567603 271 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 SNORA4-201ENST00000584302 138 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
LIMS1P48059 MIR377-201ENST00000362145 69 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 RNU6-571P-201ENST00000384128 107 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 AC244636.1-201ENST00000421152 228 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 HMGN2P23-201ENST00000456759 269 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 MIR4712-201ENST00000583750 82 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 SNRPGP19-201ENST00000603826 189 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 AL773524.1-201ENST00000614065 229 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 MIR8066-201ENST00000617280 78 ntBASIC1.77□□□□□ -2.13
LIMS1P48059 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.77□□□□□ -2.13
LIMS1P48059 SNORA67.3-201ENST00000384366 140 ntBASIC1.76□□□□□ -2.13
LIMS1P48059 RNU6-1165P-201ENST00000410119 107 ntBASIC1.76□□□□□ -2.13
LIMS1P48059 RNU6-519P-201ENST00000410590 108 ntBASIC1.76□□□□□ -2.13
LIMS1P48059 SNORD4B-201ENST00000459083 72 ntBASIC1.76□□□□□ -2.13
LIMS1P48059 RNU6-850P-201ENST00000516934 103 ntBASIC1.76□□□□□ -2.13
LIMS1P48059 SNORA25.3-201ENST00000363205 127 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 MT-TF-201ENST00000387314 71 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 RPL30P7-201ENST00000479312 323 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 MIR2115-201ENST00000516657 100 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 RNU11-2P-201ENST00000516898 142 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.75□□□□□ -2.13
LIMS1P48059 MIR4713-201ENST00000582691 75 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 AL512598.1-201ENST00000610158 273 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 uc_338.6-201ENST00000613544 171 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.75□□□□□ -2.13
LIMS1P48059 U6.109-201ENST00000636749 87 ntBASIC1.75□□□□□ -2.13
LIMS1P48059 MIR302D-201ENST00000362275 68 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 Y_RNA.57-201ENST00000362806 113 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 Y_RNA.338-201ENST00000365320 114 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 MIR583-201ENST00000384846 75 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
LIMS1P48059 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
LIMS1P48059 MIR1185-1-201ENST00000408598 86 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 RNU7-85P-201ENST00000458851 63 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 RNU7-62P-201ENST00000458856 62 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 Y_RNA.648-201ENST00000459455 110 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 MIR6516-201ENST00000630554 81 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 MIR4662A-201ENST00000637499 67 ntBASIC1.74□□□□□ -2.13
LIMS1P48059 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LIMS1P48059 Y_RNA.119-201ENST00000363301 96 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 RNU6-776P-201ENST00000364403 104 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 RNU6-1022P-201ENST00000365049 104 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 RNU6-580P-201ENST00000365159 107 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 RNA5SP247-201ENST00000411181 105 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 AL133373.1-201ENST00000497098 94 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 MIR4500-201ENST00000579472 76 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 MIR8074-201ENST00000615081 81 ntBASIC1.73□□□□□ -2.13
LIMS1P48059 SNORD115-37-201ENST00000363768 82 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 SNORD48-201ENST00000364953 64 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 U8.13-201ENST00000390842 128 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 RNU6-205P-201ENST00000390858 107 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 MIR1236-201ENST00000408340 102 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 AC005908.1-201ENST00000468701 347 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 RNA5SP182-201ENST00000516064 82 ntBASIC1.72□□□□□ -2.13
LIMS1P48059 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.72□□□□□ -2.13
LIMS1P48059 SNORA16.1-201ENST00000364597 132 ntBASIC1.71□□□□□ -2.14
LIMS1P48059 BX276092.1-201ENST00000427368 251 ntBASIC1.71□□□□□ -2.14
LIMS1P48059 AC245517.4-201ENST00000448601 281 ntBASIC1.71□□□□□ -2.14
LIMS1P48059 MIR4299-201ENST00000577899 72 ntBASIC1.71□□□□□ -2.14
LIMS1P48059 AC103810.8-201ENST00000607347 118 ntBASIC1.71□□□□□ -2.14
LIMS1P48059 RNU6-315P-201ENST00000362666 107 ntBASIC1.7□□□□□ -2.14
LIMS1P48059 RNA5SP264-201ENST00000363115 107 ntBASIC1.7□□□□□ -2.14
LIMS1P48059 RNU6-65P-201ENST00000516332 98 ntBASIC1.7□□□□□ -2.14
LIMS1P48059 SNORA25.13-201ENST00000516395 103 ntBASIC1.7□□□□□ -2.14
LIMS1P48059 RNU7-153P-201ENST00000516455 62 ntBASIC1.7□□□□□ -2.14
LIMS1P48059 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.7□□□□□ -2.14
LIMS1P48059 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.7□□□□□ -2.14
LIMS1P48059 RNU6-624P-201ENST00000363411 107 ntBASIC1.69□□□□□ -2.14
LIMS1P48059 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.69□□□□□ -2.14
LIMS1P48059 Y_RNA.588-201ENST00000391254 102 ntBASIC1.69□□□□□ -2.14
LIMS1P48059 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
LIMS1P48059 MIR103A2-201ENST00000362154 78 ntBASIC1.68□□□□□ -2.14
LIMS1P48059 SNORD36A-201ENST00000362874 73 ntBASIC1.68□□□□□ -2.14
LIMS1P48059 RNU6-654P-201ENST00000364373 107 ntBASIC1.68□□□□□ -2.14
LIMS1P48059 MIR4419B-201ENST00000577260 68 ntBASIC1.68□□□□□ -2.14
LIMS1P48059 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.68□□□□□ -2.14
LIMS1P48059 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
LIMS1P48059 RNU4-32P-201ENST00000363404 141 ntBASIC1.67□□□□□ -2.14
LIMS1P48059 RNU6-478P-201ENST00000363904 110 ntBASIC1.67□□□□□ -2.14
LIMS1P48059 RNU6-1229P-201ENST00000364295 107 ntBASIC1.67□□□□□ -2.14
LIMS1P48059 MIR18B-201ENST00000454574 71 ntBASIC1.67□□□□□ -2.14
LIMS1P48059 MIR4491-201ENST00000581087 68 ntBASIC1.67□□□□□ -2.14
LIMS1P48059 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.66□□□□□ -2.14
LIMS1P48059 SNORA72.6-201ENST00000384520 129 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 RNU6-129P-201ENST00000391022 107 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 RNU6-1053P-201ENST00000515930 101 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 RNU6-75P-201ENST00000515944 104 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 RNU6-947P-201ENST00000516264 106 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 MIR3122-201ENST00000577243 73 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 MIR4498-201ENST00000577599 66 ntBASIC1.66□□□□□ -2.14
LIMS1P48059 SNORD1A-201ENST00000364968 72 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 MIR516A2-201ENST00000384888 90 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 MIR516A1-201ENST00000385033 90 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 RNU6-1254P-201ENST00000391266 104 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms