Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNA5SP330-201ENST00000517096 96 ntBASIC0.2□□□□□ -2.38
CDX1P47902 RNA5SP47-201ENST00000517230 109 ntBASIC0.2□□□□□ -2.38
CDX1P47902 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.2□□□□□ -2.38
CDX1P47902 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.2□□□□□ -2.38
CDX1P47902 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.2□□□□□ -2.38
CDX1P47902 AC244669.1-204ENST00000621564 178 ntBASIC0.2□□□□□ -2.38
CDX1P47902 MIR3658-201ENST00000636291 56 ntBASIC0.2□□□□□ -2.38
CDX1P47902 AC091304.10-201ENST00000641554 121 ntBASIC0.2□□□□□ -2.38
CDX1P47902 Y_RNA.258-201ENST00000364613 105 ntBASIC0.19□□□□□ -2.38
CDX1P47902 Y_RNA.476-201ENST00000384347 108 ntBASIC0.19□□□□□ -2.38
CDX1P47902 AC069271.1-201ENST00000445577 156 ntBASIC0.19□□□□□ -2.38
CDX1P47902 RNU5E-3P-201ENST00000515913 68 ntBASIC0.19□□□□□ -2.38
CDX1P47902 Y_RNA.662-201ENST00000516028 97 ntBASIC0.19□□□□□ -2.38
CDX1P47902 Y_RNA.690-201ENST00000516603 95 ntBASIC0.19□□□□□ -2.38
CDX1P47902 RNU6-388P-201ENST00000517012 105 ntBASIC0.19□□□□□ -2.38
CDX1P47902 RNU6-389P-201ENST00000517048 105 ntBASIC0.19□□□□□ -2.38
CDX1P47902 RNU2-60P-201ENST00000517290 128 ntBASIC0.19□□□□□ -2.38
CDX1P47902 AC138749.4-201ENST00000563970 127 ntBASIC0.19□□□□□ -2.38
CDX1P47902 MIR4514-201ENST00000581410 57 ntBASIC0.19□□□□□ -2.38
CDX1P47902 AC098479.1-201ENST00000609225 154 ntBASIC0.19□□□□□ -2.38
CDX1P47902 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.19□□□□□ -2.38
CDX1P47902 Y_RNA.115-201ENST00000363272 98 ntBASIC0.18□□□□□ -2.38
CDX1P47902 Y_RNA.240-201ENST00000364469 95 ntBASIC0.18□□□□□ -2.38
CDX1P47902 RNU6-309P-201ENST00000364573 106 ntBASIC0.18□□□□□ -2.38
CDX1P47902 RNU6-200P-201ENST00000364743 107 ntBASIC0.18□□□□□ -2.38
CDX1P47902 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
CDX1P47902 AL078595.1-201ENST00000404458 226 ntBASIC0.18□□□□□ -2.38
CDX1P47902 RNU4-69P-201ENST00000410677 143 ntBASIC0.18□□□□□ -2.38
CDX1P47902 RNU7-123P-201ENST00000515911 60 ntBASIC0.18□□□□□ -2.38
CDX1P47902 SNORA62.5-201ENST00000516634 120 ntBASIC0.18□□□□□ -2.38
CDX1P47902 RNU6-861P-201ENST00000516745 106 ntBASIC0.18□□□□□ -2.38
CDX1P47902 AC112693.2-201ENST00000556538 232 ntBASIC0.18□□□□□ -2.38
CDX1P47902 AL359881.1-201ENST00000602916 267 ntBASIC0.18□□□□□ -2.38
CDX1P47902 MIR7107-201ENST00000611489 80 ntBASIC0.18□□□□□ -2.38
CDX1P47902 MIR6828-201ENST00000636181 60 ntBASIC0.18□□□□□ -2.38
CDX1P47902 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.18□□□□□ -2.38
CDX1P47902 Y_RNA.49-201ENST00000362714 112 ntBASIC0.17□□□□□ -2.38
CDX1P47902 Y_RNA.56-201ENST00000362798 112 ntBASIC0.17□□□□□ -2.38
CDX1P47902 RNA5SP245-201ENST00000364239 121 ntBASIC0.17□□□□□ -2.38
CDX1P47902 Y_RNA.366-201ENST00000365540 102 ntBASIC0.17□□□□□ -2.38
CDX1P47902 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
CDX1P47902 MIR1197-201ENST00000408818 88 ntBASIC0.17□□□□□ -2.38
CDX1P47902 RNU6-508P-201ENST00000363231 103 ntBASIC0.16□□□□□ -2.38
CDX1P47902 SNORA63.5-201ENST00000363548 123 ntBASIC0.16□□□□□ -2.38
CDX1P47902 Y_RNA.298-201ENST00000364960 107 ntBASIC0.16□□□□□ -2.38
CDX1P47902 Y_RNA.423-201ENST00000384057 113 ntBASIC0.16□□□□□ -2.38
CDX1P47902 SNORD77B-201ENST00000391112 67 ntBASIC0.16□□□□□ -2.38
CDX1P47902 AL603914.1-201ENST00000401964 204 ntBASIC0.16□□□□□ -2.38
CDX1P47902 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.16□□□□□ -2.38
CDX1P47902 RNU6-138P-201ENST00000515952 107 ntBASIC0.16□□□□□ -2.38
CDX1P47902 AC069113.3-201ENST00000521019 150 ntBASIC0.16□□□□□ -2.38
CDX1P47902 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.16□□□□□ -2.38
CDX1P47902 RNA5SP457-201ENST00000363657 124 ntBASIC0.15□□□□□ -2.39
CDX1P47902 RNY1P2-201ENST00000364820 117 ntBASIC0.15□□□□□ -2.39
CDX1P47902 MT-TG-201ENST00000387429 68 ntBASIC0.15□□□□□ -2.39
CDX1P47902 RNU7-120P-201ENST00000459334 63 ntBASIC0.15□□□□□ -2.39
CDX1P47902 Y_RNA.651-201ENST00000459380 103 ntBASIC0.15□□□□□ -2.39
CDX1P47902 Y_RNA.686-201ENST00000516548 134 ntBASIC0.15□□□□□ -2.39
CDX1P47902 AC023932.2-201ENST00000603176 175 ntBASIC0.15□□□□□ -2.39
CDX1P47902 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
CDX1P47902 TUG1_4.1-201ENST00000619464 181 ntBASIC0.15□□□□□ -2.39
CDX1P47902 MIR4315-1-201ENST00000636800 73 ntBASIC0.15□□□□□ -2.39
CDX1P47902 MIR4315-2-201ENST00000640925 73 ntBASIC0.15□□□□□ -2.39
CDX1P47902 Y_RNA.29-201ENST00000362570 113 ntBASIC0.14□□□□□ -2.39
CDX1P47902 RNY1P11-201ENST00000363759 113 ntBASIC0.14□□□□□ -2.39
CDX1P47902 RNU4-67P-201ENST00000364569 141 ntBASIC0.14□□□□□ -2.39
CDX1P47902 RNU6-429P-201ENST00000384582 108 ntBASIC0.14□□□□□ -2.39
CDX1P47902 MIR548H5-201ENST00000580314 60 ntBASIC0.14□□□□□ -2.39
CDX1P47902 AL137067.1-201ENST00000615933 120 ntBASIC0.14□□□□□ -2.39
CDX1P47902 AL109933.3-201ENST00000619095 188 ntBASIC0.14□□□□□ -2.39
CDX1P47902 Y_RNA.85-201ENST00000363014 111 ntBASIC0.13□□□□□ -2.39
CDX1P47902 SNORD115-24-201ENST00000363528 82 ntBASIC0.13□□□□□ -2.39
CDX1P47902 Y_RNA.272-201ENST00000364696 102 ntBASIC0.13□□□□□ -2.39
CDX1P47902 Y_RNA.441-201ENST00000384123 112 ntBASIC0.13□□□□□ -2.39
CDX1P47902 MIR548L-201ENST00000408303 86 ntBASIC0.13□□□□□ -2.39
CDX1P47902 RNU6-1135P-201ENST00000411083 103 ntBASIC0.13□□□□□ -2.39
CDX1P47902 AC138869.1-201ENST00000568623 124 ntBASIC0.13□□□□□ -2.39
CDX1P47902 MIR4500-201ENST00000579472 76 ntBASIC0.13□□□□□ -2.39
CDX1P47902 RNU7-10P-201ENST00000607194 63 ntBASIC0.13□□□□□ -2.39
CDX1P47902 SNORA9.1-201ENST00000362412 131 ntBASIC0.12□□□□□ -2.39
CDX1P47902 Y_RNA.251-201ENST00000364551 99 ntBASIC0.12□□□□□ -2.39
CDX1P47902 RNU4-11P-201ENST00000365287 132 ntBASIC0.12□□□□□ -2.39
CDX1P47902 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.12□□□□□ -2.39
CDX1P47902 RNU6-1321P-201ENST00000390905 107 ntBASIC0.12□□□□□ -2.39
CDX1P47902 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
CDX1P47902 Y_RNA.98-201ENST00000363109 102 ntBASIC0.11□□□□□ -2.39
CDX1P47902 RNU6-682P-201ENST00000363843 106 ntBASIC0.11□□□□□ -2.39
CDX1P47902 RNU6-1126P-201ENST00000384002 107 ntBASIC0.11□□□□□ -2.39
CDX1P47902 RNU6-187P-201ENST00000384139 106 ntBASIC0.11□□□□□ -2.39
CDX1P47902 Y_RNA.448-201ENST00000384185 108 ntBASIC0.11□□□□□ -2.39
CDX1P47902 MIR1270-201ENST00000459320 83 ntBASIC0.11□□□□□ -2.39
CDX1P47902 Y_RNA.700-201ENST00000516806 100 ntBASIC0.11□□□□□ -2.39
CDX1P47902 SNORA81.3-201ENST00000517283 198 ntBASIC0.11□□□□□ -2.39
CDX1P47902 Y_RNA.30-201ENST00000362572 97 ntBASIC0.1□□□□□ -2.39
CDX1P47902 RNU6-151P-201ENST00000364158 107 ntBASIC0.1□□□□□ -2.39
CDX1P47902 MIR635-201ENST00000384830 98 ntBASIC0.1□□□□□ -2.39
CDX1P47902 MIR206-201ENST00000384872 86 ntBASIC0.1□□□□□ -2.39
CDX1P47902 RNA5SP63-201ENST00000391225 112 ntBASIC0.1□□□□□ -2.39
CDX1P47902 RNU7-48P-201ENST00000458875 63 ntBASIC0.1□□□□□ -2.39
CDX1P47902 RNY4P20-201ENST00000516678 93 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 232.8 ms