Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MIR4452-201ENST00000583004 71 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 MIR7111-201ENST00000619751 72 ntBASIC0.63□□□□□ -2.31
NKX2-1P43699 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.63□□□□□ -2.31
NKX2-1P43699 MTND5P18-201ENST00000445624 1801 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 Y_RNA.71-201ENST00000362892 104 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 Y_RNA.98-201ENST00000363109 102 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 SNORD116-14-201ENST00000383894 92 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 SNORD116-17-201ENST00000383929 92 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 SNORA32-201ENST00000384072 121 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 SNORD116-15-201ENST00000384445 92 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 RNU6-429P-201ENST00000384582 108 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 SNORD116-19-201ENST00000384729 92 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 MIR520H-201ENST00000385126 88 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 RPL39P25-201ENST00000449384 154 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 RNU6-772P-201ENST00000516042 105 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 RNU7-2P-201ENST00000516096 62 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 AC138749.4-201ENST00000563970 127 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 MIR3973-201ENST00000579824 107 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 AC008608.1-201ENST00000603910 127 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 MIR6767-201ENST00000637302 66 ntBASIC0.62□□□□□ -2.31
NKX2-1P43699 MIR96-201ENST00000362288 78 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 RNU6-235P-201ENST00000362644 107 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 Y_RNA.127-201ENST00000363386 109 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 Y_RNA.355-201ENST00000365462 98 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 MIR206-201ENST00000384872 86 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 MIR548D2-201ENST00000384955 97 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 MIR7-2-201ENST00000384970 110 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 MIR1263-201ENST00000408324 86 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.61□□□□□ -2.31
NKX2-1P43699 RNU6-1018P-201ENST00000516577 106 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.61□□□□□ -2.31
NKX2-1P43699 AC011195.1-201ENST00000578177 177 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 U6.95-201ENST00000636931 70 ntBASIC0.61□□□□□ -2.31
NKX2-1P43699 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.61□□□□□ -2.31
NKX2-1P43699 AL157777.2-201ENST00000258070 137 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 Y_RNA.13-201ENST00000362403 112 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 RNU4-58P-201ENST00000363192 141 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 Y_RNA.174-201ENST00000363781 105 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 RPL39P34-201ENST00000477141 156 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 RNU6-135P-201ENST00000516769 101 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 RNU7-6P-201ENST00000516845 62 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 AC133485.1-201ENST00000567176 124 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 MIR3910-1-201ENST00000580936 111 ntBASIC0.6□□□□□ -2.31
NKX2-1P43699 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
NKX2-1P43699 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.59□□□□□ -2.31
NKX2-1P43699 RNU6-363P-201ENST00000362895 105 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 Y_RNA.328-201ENST00000365208 113 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 RNU6-616P-201ENST00000384353 107 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 RNU6-1321P-201ENST00000390905 107 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 AC015818.7-201ENST00000428754 109 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 AC087499.7-201ENST00000441958 109 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 RNU7-48P-201ENST00000458875 63 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 uc_338.16-201ENST00000621804 95 ntBASIC0.59□□□□□ -2.31
NKX2-1P43699 MIR18A-201ENST00000362310 71 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 Y_RNA.56-201ENST00000362798 112 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 MIR1276-201ENST00000408707 83 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 Y_RNA.630-201ENST00000411370 108 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 AC004941.2-201ENST00000427009 228 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 AC018659.1-201ENST00000551083 169 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 MIR3612-201ENST00000579753 87 ntBASIC0.58□□□□□ -2.32
NKX2-1P43699 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
NKX2-1P43699 AL589743.1-201ENST00000551932 2712 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 MIR373-201ENST00000362273 69 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 Y_RNA.85-201ENST00000363014 111 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 Y_RNA.119-201ENST00000363301 96 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 RNA5SP133-201ENST00000363368 119 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 Y_RNA.536-201ENST00000384621 113 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 MIR548I2-201ENST00000408348 149 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 RNU6-735P-201ENST00000410612 107 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 AC008267.6-201ENST00000441664 139 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 RNU7-107P-201ENST00000459121 61 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 RNU6-1061P-201ENST00000516530 99 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 RNA5SP480-201ENST00000516840 109 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 Y_RNA.773-201ENST00000607168 90 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 AP001362.1-201ENST00000625165 124 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 AC132825.6-201ENST00000638861 357 ntBASIC0.57□□□□□ -2.32
NKX2-1P43699 RNU6-834P-201ENST00000362367 110 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 RNU6-403P-201ENST00000363163 104 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 RNA5SP117-201ENST00000365294 118 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 Y_RNA.353-201ENST00000365440 108 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 SNORA25.16-201ENST00000516741 121 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 RNU6-789P-201ENST00000517105 102 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 AL590095.2-201ENST00000604136 117 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 MIR6515-201ENST00000619843 57 ntBASIC0.56□□□□□ -2.32
NKX2-1P43699 RNU1-93P-201ENST00000364704 169 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 RNU6-1117P-201ENST00000384525 104 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 MIR519A1-201ENST00000385257 85 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 MIR1912-201ENST00000410389 80 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 RNA5SP222-201ENST00000411039 105 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 RNU6-406P-201ENST00000516470 107 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 RNU7-10P-201ENST00000607194 63 ntBASIC0.55□□□□□ -2.32
NKX2-1P43699 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.55□□□□□ -2.32
NKX2-1P43699 RNU6-1313P-201ENST00000362622 102 ntBASIC0.54□□□□□ -2.32
NKX2-1P43699 Y_RNA.344-201ENST00000365381 112 ntBASIC0.54□□□□□ -2.32
NKX2-1P43699 Y_RNA.448-201ENST00000384185 108 ntBASIC0.54□□□□□ -2.32
NKX2-1P43699 RNU6-291P-201ENST00000384720 107 ntBASIC0.54□□□□□ -2.32
NKX2-1P43699 MIR598-201ENST00000384868 97 ntBASIC0.54□□□□□ -2.32
NKX2-1P43699 RNU6-479P-201ENST00000516348 105 ntBASIC0.54□□□□□ -2.32
NKX2-1P43699 RNA5SP121-201ENST00000516537 101 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms