Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNU6-561P-201ENST00000516222 102 ntBASIC-1.74□□□□□ -2.69
SDC4P31431 RNU6-453P-201ENST00000516819 85 ntBASIC-1.74□□□□□ -2.69
SDC4P31431 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.74□□□□□ -2.69
SDC4P31431 VN1R91P-201ENST00000594377 169 ntBASIC-1.74□□□□□ -2.69
SDC4P31431 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.75□□□□□ -2.69
SDC4P31431 RNU6-890P-201ENST00000384121 107 ntBASIC-1.75□□□□□ -2.69
SDC4P31431 RNU6-662P-201ENST00000384253 104 ntBASIC-1.75□□□□□ -2.69
SDC4P31431 RNU6-310P-201ENST00000384655 107 ntBASIC-1.75□□□□□ -2.69
SDC4P31431 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.75□□□□□ -2.69
SDC4P31431 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.75□□□□□ -2.69
SDC4P31431 Y_RNA.691-201ENST00000516611 103 ntBASIC-1.75□□□□□ -2.69
SDC4P31431 Y_RNA.142-201ENST00000363491 102 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 AL606845.1-201ENST00000404881 255 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 SNORD42B-201ENST00000458893 67 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 MIR5688-201ENST00000580619 83 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 DLEU2_2.2-201ENST00000615474 90 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 snoU18.1-201ENST00000629629 71 ntBASIC-1.76□□□□□ -2.69
SDC4P31431 RNU6-472P-201ENST00000384299 107 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 HSPE1P25-201ENST00000455484 251 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 RNU7-2P-201ENST00000516096 62 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 RNU6-570P-201ENST00000517051 105 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 AC048344.4-201ENST00000619744 527 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 AC090582.1-201ENST00000636321 199 ntBASIC-1.77□□□□□ -2.69
SDC4P31431 RNU6-957P-201ENST00000363652 99 ntBASIC-1.78□□□□□ -2.69
SDC4P31431 MIR4464-201ENST00000580818 92 ntBASIC-1.78□□□□□ -2.69
SDC4P31431 AC093424.1-201ENST00000604999 338 ntBASIC-1.78□□□□□ -2.69
SDC4P31431 Z99129.1-201ENST00000612510 255 ntBASIC-1.78□□□□□ -2.69
SDC4P31431 Y_RNA.157-201ENST00000363638 102 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 RNU4-69P-201ENST00000410677 143 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 RNU2-51P-201ENST00000410708 197 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 RNU6-130P-201ENST00000411112 103 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 SNORD57-201ENST00000448188 72 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.79□□□□□ -2.7
SDC4P31431 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.79□□□□□ -2.7
SDC4P31431 MIR4272-201ENST00000635924 64 ntBASIC-1.79□□□□□ -2.7
SDC4P31431 SNORD36A-201ENST00000362874 73 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 SNORD113-8-201ENST00000363497 74 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 Y_RNA.303-201ENST00000364998 94 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 MIR34C-201ENST00000384831 77 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 AC022079.1-201ENST00000621546 602 ntBASIC-1.8□□□□□ -2.7
SDC4P31431 UBE2WP1-201ENST00000362030 340 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 RNU6-208P-201ENST00000362431 107 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 SNORD27-201ENST00000363981 72 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 MIR889-201ENST00000401280 79 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 HLA-S-202ENST00000425174 53 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 AL731563.1-201ENST00000442202 214 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.81□□□□□ -2.7
SDC4P31431 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 AC109635.3-201ENST00000529536 185 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 MIR4696-201ENST00000581431 70 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 AC138207.3-201ENST00000585289 166 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 AC084782.3-201ENST00000612282 578 ntBASIC-1.81□□□□□ -2.7
SDC4P31431 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 RNU6-746P-201ENST00000384112 109 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 RNU6-1042P-201ENST00000384204 107 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 MIR559-201ENST00000385188 96 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 RNU6-243P-201ENST00000391140 107 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 MTND4P17-201ENST00000470444 350 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 MIR3611-201ENST00000584484 83 ntBASIC-1.82□□□□□ -2.7
SDC4P31431 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 Y_RNA.402-201ENST00000383972 102 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 RNU6-699P-201ENST00000517081 110 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 MIR6818-201ENST00000621576 65 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 MIR6888-201ENST00000621977 67 ntBASIC-1.83□□□□□ -2.7
SDC4P31431 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 RNU4-32P-201ENST00000363404 141 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 RNU6-1188P-201ENST00000363795 107 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 SNORA62.4-201ENST00000365504 151 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 SNORD101-201ENST00000384027 73 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 RNU6-616P-201ENST00000384353 107 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 MIR527-201ENST00000385244 85 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 U8.20-201ENST00000459445 131 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 AC026421.1-201ENST00000519101 163 ntBASIC-1.84□□□□□ -2.7
SDC4P31431 MIR409-201ENST00000362237 79 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 RNU6-978P-201ENST00000364371 103 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 RNU6-690P-201ENST00000365242 106 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 MIR624-201ENST00000385217 97 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 RNU6-370P-201ENST00000411008 104 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 RNU6-559P-201ENST00000516151 98 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.85□□□□□ -2.71
SDC4P31431 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.85□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms