Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.25□□□□□ -2.05
MSX1P28360 SNORD93-201ENST00000408813 74 ntBASIC2.25□□□□□ -2.05
MSX1P28360 RNA5SP425-201ENST00000410336 112 ntBASIC2.25□□□□□ -2.05
MSX1P28360 AC245884.12-201ENST00000615364 59 ntBASIC2.25□□□□□ -2.05
MSX1P28360 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
MSX1P28360 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.24□□□□□ -2.05
MSX1P28360 AC016717.2-201ENST00000609089 5141 ntBASIC2.24□□□□□ -2.05
MSX1P28360 MIRLET7F1-201ENST00000362202 87 ntBASIC2.24□□□□□ -2.05
MSX1P28360 RNU6-957P-201ENST00000363652 99 ntBASIC2.24□□□□□ -2.05
MSX1P28360 MIR518E-201ENST00000385252 88 ntBASIC2.24□□□□□ -2.05
MSX1P28360 MIR1185-1-201ENST00000408598 86 ntBASIC2.24□□□□□ -2.05
MSX1P28360 AC015818.7-201ENST00000428754 109 ntBASIC2.24□□□□□ -2.05
MSX1P28360 MIR18B-201ENST00000454574 71 ntBASIC2.24□□□□□ -2.05
MSX1P28360 RNU6-1194P-201ENST00000516208 104 ntBASIC2.24□□□□□ -2.05
MSX1P28360 RNU6-448P-201ENST00000517052 107 ntBASIC2.24□□□□□ -2.05
MSX1P28360 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
MSX1P28360 RNU6-208P-201ENST00000362431 107 ntBASIC2.23□□□□□ -2.05
MSX1P28360 RNU6-580P-201ENST00000365159 107 ntBASIC2.23□□□□□ -2.05
MSX1P28360 SNORD23.1-201ENST00000408212 104 ntBASIC2.23□□□□□ -2.05
MSX1P28360 MIR4484-201ENST00000582855 83 ntBASIC2.23□□□□□ -2.05
MSX1P28360 SNRPGP19-201ENST00000603826 189 ntBASIC2.23□□□□□ -2.05
MSX1P28360 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.23□□□□□ -2.05
MSX1P28360 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
MSX1P28360 MIR103A2-201ENST00000362154 78 ntBASIC2.22□□□□□ -2.05
MSX1P28360 RNU1-36P-201ENST00000365130 165 ntBASIC2.22□□□□□ -2.05
MSX1P28360 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
MSX1P28360 Y_RNA.681-201ENST00000516445 113 ntBASIC2.22□□□□□ -2.05
MSX1P28360 RNU6-1015P-201ENST00000517121 99 ntBASIC2.22□□□□□ -2.05
MSX1P28360 MIR6840-201ENST00000611937 71 ntBASIC2.22□□□□□ -2.05
MSX1P28360 AL596028.1-201ENST00000326971 197 ntBASIC2.21□□□□□ -2.06
MSX1P28360 RNA5SP264-201ENST00000363115 107 ntBASIC2.21□□□□□ -2.06
MSX1P28360 RNU6-654P-201ENST00000364373 107 ntBASIC2.21□□□□□ -2.06
MSX1P28360 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
MSX1P28360 SNORD100-201ENST00000408573 76 ntBASIC2.21□□□□□ -2.06
MSX1P28360 AL356320.1-201ENST00000429616 163 ntBASIC2.21□□□□□ -2.06
MSX1P28360 RNU6-70P-201ENST00000516438 60 ntBASIC2.21□□□□□ -2.06
MSX1P28360 RNU6-303P-201ENST00000517091 106 ntBASIC2.21□□□□□ -2.06
MSX1P28360 MIR4648-201ENST00000580107 72 ntBASIC2.21□□□□□ -2.06
MSX1P28360 MIR1291-201ENST00000627649 87 ntBASIC2.21□□□□□ -2.06
MSX1P28360 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
MSX1P28360 RNU6-403P-201ENST00000363163 104 ntBASIC2.2□□□□□ -2.06
MSX1P28360 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
MSX1P28360 U8.13-201ENST00000390842 128 ntBASIC2.2□□□□□ -2.06
MSX1P28360 RN7SKP223-201ENST00000410582 62 ntBASIC2.2□□□□□ -2.06
MSX1P28360 AL773524.1-201ENST00000614065 229 ntBASIC2.2□□□□□ -2.06
MSX1P28360 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
MSX1P28360 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.19□□□□□ -2.06
MSX1P28360 Y_RNA.536-201ENST00000384621 113 ntBASIC2.19□□□□□ -2.06
MSX1P28360 RNA5SP95-201ENST00000410319 137 ntBASIC2.19□□□□□ -2.06
MSX1P28360 AC074348.1-201ENST00000426503 132 ntBASIC2.19□□□□□ -2.06
MSX1P28360 snoU13.23-201ENST00000458863 104 ntBASIC2.19□□□□□ -2.06
MSX1P28360 MIR548H5-201ENST00000580314 60 ntBASIC2.19□□□□□ -2.06
MSX1P28360 RNU7-10P-201ENST00000607194 63 ntBASIC2.19□□□□□ -2.06
MSX1P28360 MIR8074-201ENST00000615081 81 ntBASIC2.19□□□□□ -2.06
MSX1P28360 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.19□□□□□ -2.06
MSX1P28360 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.18□□□□□ -2.06
MSX1P28360 MIR101-2-201ENST00000362195 79 ntBASIC2.18□□□□□ -2.06
MSX1P28360 RNU5F-1-201ENST00000362507 117 ntBASIC2.18□□□□□ -2.06
MSX1P28360 MIR519A1-201ENST00000385257 85 ntBASIC2.18□□□□□ -2.06
MSX1P28360 SNORD90-201ENST00000391145 111 ntBASIC2.18□□□□□ -2.06
MSX1P28360 AC244636.1-201ENST00000421152 228 ntBASIC2.18□□□□□ -2.06
MSX1P28360 AC108210.2-201ENST00000503681 201 ntBASIC2.18□□□□□ -2.06
MSX1P28360 TRAJ51-201ENST00000504127 63 ntBASIC2.18□□□□□ -2.06
MSX1P28360 AC026436.1-201ENST00000510537 270 ntBASIC2.18□□□□□ -2.06
MSX1P28360 RNU6-687P-201ENST00000516443 89 ntBASIC2.18□□□□□ -2.06
MSX1P28360 AL137847.3-201ENST00000611521 109 ntBASIC2.18□□□□□ -2.06
MSX1P28360 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
MSX1P28360 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
MSX1P28360 RNU7-195P-201ENST00000458793 62 ntBASIC2.17□□□□□ -2.06
MSX1P28360 RNU6-634P-201ENST00000459134 106 ntBASIC2.17□□□□□ -2.06
MSX1P28360 YWHAEP2-201ENST00000580066 112 ntBASIC2.17□□□□□ -2.06
MSX1P28360 YWHAEP3-201ENST00000582767 121 ntBASIC2.17□□□□□ -2.06
MSX1P28360 AC013244.2-201ENST00000603396 103 ntBASIC2.17□□□□□ -2.06
MSX1P28360 Y_RNA.12-201ENST00000362393 112 ntBASIC2.16□□□□□ -2.06
MSX1P28360 MIR1289-2-201ENST00000408360 111 ntBASIC2.16□□□□□ -2.06
MSX1P28360 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.16□□□□□ -2.06
MSX1P28360 AL591806.2-201ENST00000433122 173 ntBASIC2.16□□□□□ -2.06
MSX1P28360 AC079804.2-201ENST00000490376 200 ntBASIC2.16□□□□□ -2.06
MSX1P28360 AC015712.3-201ENST00000559380 164 ntBASIC2.16□□□□□ -2.06
MSX1P28360 MIR1273D-201ENST00000577266 86 ntBASIC2.16□□□□□ -2.06
MSX1P28360 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.16□□□□□ -2.06
MSX1P28360 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
MSX1P28360 Y_RNA.809-201ENST00000516058 95 ntBASIC2.15□□□□□ -2.07
MSX1P28360 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.15□□□□□ -2.07
MSX1P28360 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.15□□□□□ -2.07
MSX1P28360 MIR4713-201ENST00000582691 75 ntBASIC2.15□□□□□ -2.07
MSX1P28360 MIR5007-201ENST00000583098 95 ntBASIC2.15□□□□□ -2.07
MSX1P28360 AC023934.1-201ENST00000574529 2389 ntBASIC2.15□□□□□ -2.07
MSX1P28360 MIR21-201ENST00000362134 72 ntBASIC2.14□□□□□ -2.07
MSX1P28360 Y_RNA.56-201ENST00000362798 112 ntBASIC2.14□□□□□ -2.07
MSX1P28360 RNA5SP99-201ENST00000364020 114 ntBASIC2.14□□□□□ -2.07
MSX1P28360 RNU6-1051P-201ENST00000365471 102 ntBASIC2.14□□□□□ -2.07
MSX1P28360 MIR764-201ENST00000390811 85 ntBASIC2.14□□□□□ -2.07
MSX1P28360 RNU6-587P-201ENST00000391282 106 ntBASIC2.14□□□□□ -2.07
MSX1P28360 RNU7-185P-201ENST00000459215 60 ntBASIC2.14□□□□□ -2.07
MSX1P28360 AC125388.1-201ENST00000459631 156 ntBASIC2.14□□□□□ -2.07
MSX1P28360 TRDV1-202ENST00000621643 102 ntBASIC2.14□□□□□ -2.07
MSX1P28360 MIR8063-201ENST00000621930 81 ntBASIC2.14□□□□□ -2.07
MSX1P28360 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
MSX1P28360 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms