Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-184P-201ENST00000516514 107 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 SNORA4-201ENST00000584302 138 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 AL442128.1-201ENST00000615151 90 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 AL512310.12-203ENST00000640543 90 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
HOXD9P28356 Y_RNA.98-201ENST00000363109 102 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 Y_RNA.363-201ENST00000365529 113 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 MIR1276-201ENST00000408707 83 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 AC096949.1-201ENST00000412047 152 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 MIR18B-201ENST00000454574 71 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 SNORA31.2-201ENST00000516019 134 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 SNORA40.13-201ENST00000516379 120 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 RNU6-1006P-201ENST00000516998 103 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
HOXD9P28356 RNU6-640P-201ENST00000363693 105 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 Y_RNA.448-201ENST00000384185 108 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 MTATP8P2-201ENST00000435212 202 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 RNU7-48P-201ENST00000458875 63 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 RNA5SP102-201ENST00000516865 106 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 RNA5SP170-201ENST00000517150 101 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 uc_338.6-201ENST00000613544 171 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 AC105081.1-201ENST00000617727 106 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 MIR2052-201ENST00000636055 55 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HOXD9P28356 RNY1P2-201ENST00000364820 117 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 SNORA25.9-201ENST00000365087 128 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 MIR34C-201ENST00000384831 77 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 SNORA75.2-201ENST00000391138 150 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 SNORA75.3-201ENST00000391231 150 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 AC036111.3-201ENST00000526389 112 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 MIR376B-201ENST00000614515 100 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 Y_RNA.43-201ENST00000362670 111 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 Y_RNA.107-201ENST00000363190 121 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORD38.1-201ENST00000363863 68 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORD45B-201ENST00000364617 72 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORD113.3-201ENST00000364630 78 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 RNU6-865P-201ENST00000364772 107 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORA80D-201ENST00000384488 135 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 MIR499A-201ENST00000384903 122 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 U8.15-201ENST00000390947 134 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 RNA5SP95-201ENST00000410319 137 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 AL591704.2-201ENST00000421658 181 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 RNU7-21P-201ENST00000459430 62 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 MIR4439-201ENST00000583746 80 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 AC096720.1-201ENST00000604441 183 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 AC012676.2-201ENST00000619258 186 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
HOXD9P28356 RNU6-170P-201ENST00000362832 104 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 RNU6-939P-201ENST00000384634 107 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 MIR618-201ENST00000385287 98 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 SNORD111-201ENST00000408139 94 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 AC133485.1-201ENST00000567176 124 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 AP001362.1-201ENST00000625165 124 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 AC008163.1-202ENST00000636004 2889 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 Y_RNA.95-201ENST00000363079 95 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 Y_RNA.247-201ENST00000364500 92 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORA25-201ENST00000384384 134 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORA2B-201ENST00000384583 137 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
HOXD9P28356 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 MIR1287-201ENST00000408492 90 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC004941.2-201ENST00000427009 228 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 RPS29P28-201ENST00000446439 141 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORD79.1-201ENST00000516069 84 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 RNU7-40P-201ENST00000516397 64 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORA70.22-201ENST00000517160 124 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC138749.4-201ENST00000563970 127 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC106800.4-201ENST00000614905 153 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC012531.4-201ENST00000616509 177 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 HSBP1P2-201ENST00000299671 229 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR96-201ENST00000362288 78 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 Y_RNA.330-201ENST00000365230 109 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 Y_RNA.369-201ENST00000365568 117 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR222-201ENST00000384992 110 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR150-201ENST00000385048 84 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 RNU6-910P-201ENST00000390844 107 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 SNORD12-201ENST00000391002 90 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MRPL35P3-201ENST00000421557 364 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR4777-201ENST00000583710 86 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR6504-201ENST00000613520 61 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 AC091304.10-201ENST00000641554 121 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 SNORD38.2-201ENST00000384470 69 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 RNU7-90P-201ENST00000459216 62 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 Y_RNA.659-201ENST00000515994 113 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 MIR5582-201ENST00000579697 68 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
HOXD9P28356 Y_RNA.96-201ENST00000363092 109 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-1255P-201ENST00000363434 112 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 Y_RNA.173-201ENST00000363776 113 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-1163P-201ENST00000364516 107 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU1-36P-201ENST00000365130 165 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 MIR548G-201ENST00000408442 89 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-795P-201ENST00000516323 103 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 MIR4491-201ENST00000581087 68 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 MIR4295-201ENST00000585286 85 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-90P-201ENST00000606352 106 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HOXD9P28356 SNORD114-27-201ENST00000363766 70 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms