Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 RNU6-1321P-201ENST00000390905 107 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 AC026407.1-201ENST00000518369 204 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 AC037487.3-201ENST00000606668 112 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 AC011603.4-201ENST00000611325 277 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 RNU6-10P-201ENST00000384036 107 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 RNU6-901P-201ENST00000384593 106 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 MIR624-201ENST00000385217 97 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 SNORA79-201ENST00000408376 140 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 RNU4-43P-201ENST00000410628 137 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.09□□□□□ -2.58
HLA-DMBP28068 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 RNU6-502P-201ENST00000362419 108 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.1□□□□□ -2.59
HLA-DMBP28068 RNU7-48P-201ENST00000458875 63 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 MIR1270-201ENST00000459320 83 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 RNU7-55P-201ENST00000459426 62 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 RNU6-86P-201ENST00000606534 107 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 AC084781.2-201ENST00000615568 161 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 AC112487.2-201ENST00000637950 304 ntBASIC-1.1□□□□□ -2.59
HLA-DMBP28068 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 RNU6-978P-201ENST00000364371 103 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 SNORA63.7-201ENST00000365579 123 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 Y_RNA.488-201ENST00000384403 102 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 MT-TY-201ENST00000387409 66 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 MIR1302-11-201ENST00000408051 138 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 MIR1302-9-201ENST00000408365 138 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 MIR1302-10-201ENST00000408734 138 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 SNX3P1X-201ENST00000414887 175 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 AC244090.1-201ENST00000441884 93 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 RNU6-561P-201ENST00000516222 102 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 SNORD38.3-201ENST00000516599 73 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 AP000676.1-201ENST00000533307 52 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 AC080013.6-201ENST00000606185 215 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 MIR1302-2-201ENST00000607096 138 ntBASIC-1.11□□□□□ -2.59
HLA-DMBP28068 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 RNU4-32P-201ENST00000363404 141 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 SNORD114-25-201ENST00000363742 72 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 RNU6-976P-201ENST00000516086 111 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 MIR4324-201ENST00000584846 72 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 MIR4320-201ENST00000636981 65 ntBASIC-1.12□□□□□ -2.59
HLA-DMBP28068 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 RNU6-728P-201ENST00000365375 104 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 MIR206-201ENST00000384872 86 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 RNU6-721P-201ENST00000410155 105 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 AC098614.3-201ENST00000438957 440 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 MIR2113-201ENST00000459007 91 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 RNU7-106P-201ENST00000459514 67 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 SNORD116-25-201ENST00000516517 92 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 AC090574.1-201ENST00000623186 233 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 AP001362.1-201ENST00000625165 124 ntBASIC-1.13□□□□□ -2.59
HLA-DMBP28068 RNU6-623P-201ENST00000363143 105 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 RNU6-571P-201ENST00000384128 107 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 RNU6-121P-201ENST00000410525 99 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.14□□□□□ -2.59
HLA-DMBP28068 RNU6-277P-201ENST00000516272 106 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 AC007012.1-201ENST00000567192 175 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 AC145423.2-201ENST00000610631 239 ntBASIC-1.14□□□□□ -2.59
HLA-DMBP28068 MTND5P18-201ENST00000445624 1801 ntBASIC-1.15□□□□□ -2.59
HLA-DMBP28068 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.15□□□□□ -2.59
HLA-DMBP28068 SNORA51.5-201ENST00000384126 131 ntBASIC-1.15□□□□□ -2.59
HLA-DMBP28068 AL500527.2-201ENST00000454105 95 ntBASIC-1.15□□□□□ -2.59
HLA-DMBP28068 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.15□□□□□ -2.59
HLA-DMBP28068 uc_338.19-201ENST00000616808 99 ntBASIC-1.15□□□□□ -2.59
HLA-DMBP28068 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.15□□□□□ -2.59
HLA-DMBP28068 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.16□□□□□ -2.6
HLA-DMBP28068 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 snoU13.13-201ENST00000458842 104 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 RNU2-35P-201ENST00000516446 142 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 SNORA40.17-201ENST00000517256 115 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 MIR3179-1-201ENST00000578940 84 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 MIR3179-2-201ENST00000579107 84 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 MIR3179-3-201ENST00000579566 84 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 AC093783.1-201ENST00000612976 329 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 MIR3179-4-201ENST00000617599 84 ntBASIC-1.16□□□□□ -2.6
HLA-DMBP28068 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 MIR652-201ENST00000385278 98 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 SNORA49-201ENST00000386157 136 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 MT-TL1-201ENST00000386347 75 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 RNU6-381P-201ENST00000391259 108 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 FGF7P6-202ENST00000451282 293 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 RNU6-274P-201ENST00000459566 107 ntBASIC-1.17□□□□□ -2.6
HLA-DMBP28068 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms